PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 484361
Common NameARALYDRAFT_484361
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family Trihelix
Protein Properties Length: 379aa    MW: 43336.5 Da    PI: 5.3752
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
484361genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix88.95.8e-2859144286
  trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstcpyfdqle 86 
               W ++e+++Li +rrem++ ++++k++k+lWe++s+kmre+gf rsp++C++kw+n+ k++kk k ++ ++ ts+ s++++y++++e
    484361  59 WAQDETRCLISLRREMDNLFNTSKSNKHLWEQISSKMREKGFDRSPTMCTDKWRNILKEFKKAKYQDDDKaTSGGSTKMSYYKEIE 144
               ****************************************************************99998879************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.607.1E-551120IPR009057Homeodomain-like
PROSITE profilePS500908.54851115IPR017877Myb-like domain
SMARTSM007176.3E-555117IPR001005SANT/Myb domain
SuperFamilySSF466893.59E-556151IPR009057Homeodomain-like
CDDcd122034.62E-2957122No hitNo description
PfamPF138373.8E-1958145No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 379 aa     Download sequence    Send to blast
MFVSDNNPSR DMNMMIDVTS SNGDLPIQQQ QHHQIILGDS SGGEDHEIIK APKKRAETWA  60
QDETRCLISL RREMDNLFNT SKSNKHLWEQ ISSKMREKGF DRSPTMCTDK WRNILKEFKK  120
AKYQDDDKAT SGGSTKMSYY KEIEDIFTER NKKVALYKSP STTTPPSSAK VDSFMQFTDK  180
GFEDTGIPFT SVEANGRPTL NLETQLDHDG LPLPIAADPV TANGVPPWSW RDTAGNGGDG  240
QPFVGRIITV KFGDYTRRFG IDGTAEAIKE AIRSAFRLRT RRAFWLEDEE QVIRSLDRDM  300
PLGNYTLRVD EGIAVRVCHY DESDPLPVHQ EEKIFYTEED YRDFLARRGW TCLREIDAFR  360
NIDNMDDLQS GVLYRGMR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2jmw_A4e-4353142186DNA binding protein GT-1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds specific DNA sequence. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00003PBM25215497Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap484361
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0723700.0AB072370.1 Arabidopsis thaliana mRNA for transcription factor GT-4, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020880067.10.0trihelix transcription factor GT-4 isoform X2
SwissprotQ9LU920.0TGT4_ARATH; Trihelix transcription factor GT-4
TrEMBLD7LQX50.0D7LQX5_ARALL; Uncharacterized protein
STRINGfgenesh2_kg.5__353__AT3G25990.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM28912768
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G25990.10.0Trihelix family protein