PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.0556s0001.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family G2-like
Protein Properties Length: 307aa    MW: 34710.4 Da    PI: 7.991
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.0556s0001.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like82.74.1e-26148201155
              G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                          k r++W+ eLH++Fv+av+qL G ++A+Pk+ilelm+v+gL++e+v+SHLQk Rl
  Bostr.0556s0001.1.p 148 KSRVVWSIELHQQFVNAVNQL-GVDEAVPKRILELMNVPGLSRENVASHLQKLRL 201
                          68*******************.9*******************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd001561.26E-12182No hitNo description
Gene3DG3DSA:3.40.50.23007.7E-7143No hitNo description
PROSITE profilePS5011012.928182IPR001789Signal transduction response regulator, receiver domain
SuperFamilySSF521721.85E-16298IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23002.8E-1044103No hitNo description
PROSITE profilePS5129411.248145204IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.5E-27145206IPR009057Homeodomain-like
SuperFamilySSF466899.85E-18146205IPR009057Homeodomain-like
TIGRFAMsTIGR015573.1E-23148201IPR006447Myb domain, plants
PfamPF002491.6E-7150200IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
GO:0042802Molecular Functionidentical protein binding
Sequence ? help Back to Top
Protein Sequence    Length: 307 aa     Download sequence    Send to blast
MLLRLMYQVT ICSQADVALT ILRERKDCFD LVLRDVYMPG MDVMSVDIRT TTVMTGINHG  60
ACDYLIKPIR PEELKNIWQH VIRRKYTMNK ELRNSQALED NKNSGSVETV FSVSECSEGS  120
VMKRRKKKTS VDREDNEDDL LDPGNSKKSR VVWSIELHQQ FVNAVNQLGV DEAVPKRILE  180
LMNVPGLSRE NVASHLQKLR LYLKRLSDIL LGQPIDNHLS ASFGVWIPND DLGRSQIQNF  240
SVDVSSASNR PVSVTTSMAV HGLSSSANFS QKGDVNNNTD HRIRQGYGSN VNEESWILER  300
SSIQRY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A5e-19147207464ARR10-B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. Could directly activate some type-A response regulators in response to cytokinins (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.0556s0001.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0881491e-167AY088149.1 Arabidopsis thaliana clone 41875 mRNA, complete sequence.
GenBankAY0997261e-167AY099726.1 Arabidopsis thaliana putative two-component response regulator protein (At2g01760) mRNA, complete cds.
GenBankAY1288871e-167AY128887.1 Arabidopsis thaliana putative two-component response regulator protein (At2g01760) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010502166.10.0PREDICTED: two-component response regulator ARR14-like isoform X2
RefseqXP_010502167.10.0PREDICTED: two-component response regulator ARR14-like isoform X3
SwissprotQ8L9Y31e-163ARR14_ARATH; Two-component response regulator ARR14
TrEMBLR0H7861e-179R0H786_9BRAS; Two-component response regulator
STRINGBostr.0556s0001.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM81502736
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01760.11e-165response regulator 14