PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Brast10G197900.1.p

Organism

Brachypodium stacei

Taxonomic ID

1071399

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

GRAS

Protein Properties

Length: 637aa MW: 71826.2 Da PI: 6.865

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Brast10G197900.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	344.4	1.9e-105	254	625	2	373
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilk 92 ++lL++cAea+ss+d + a++lL+r++ +sp+gd qRla+yf+++L+arl++++s+ly+++ ++t +e ++a++l++ ++ ++k Brast10G197900.1.p 254 ETLLIRCAEAISSNDRRSASELLERIKRYSSPTGDGRQRLAHYFAKGLEARLSGTGSQLYSSCMGRRTC---AVELIKAYHLYNATCCFVK 341 789*******************************************************999999888...9************** PP GRAS 93 fshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvl 181 ++ l N +I++aveg +++Hi+ ++i+ GlQWp L++ La+R++gpp+lRiTg++ p++g +e++ etg+rL+++A+e+gvpf+f++ Brast10G197900.1.p 342 MTLLFSNMTIYKAVEGRRKLHIVQYGINTGLQWPELIRWLANREGGPPELRITGINMPQPGfnLAEQIDETGHRLSNYASEFGVPFKFHA- 431 ********************************************************99999*********************. PP GRAS 182 vakrledleleeLrvkpgEalaVnlvlqlhrlldesvsles..erdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfds 270 + +le+++ e+L+++p+E+l+Vn+ +q l+des++ ++ +rd vL+ ++ ++P ++v++ + +++++ F++rf + l+++++lfd+ Brast10G197900.1.p 432 IIAQLEAVQAEDLHIDPDEVLIVNSLFQFRILMDESLTFDKvnPRDMVLNNIRMMKPSMFVHAITNGSYSAAVFMTRFRKVLSHFTSLFDM 522 6999*****************************9998889******************************************* PP GRAS 271 leaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlg 361 +e+ +p ++++r vEr +++r+++n++acegaer+er +++++W++r ++aG++++pl+ +++ +k +++ + + ++++e++ +l++g Brast10G197900.1.p 523 METIIPGNNDKRLQVERYFFARSAMNIIACEGAERVERPQNYREWQARNHRAGLRQLPLDPDIVLMVKDKVKNQYHKHFMINEDHRWLLQG 613 ***********************************************************************999********* PP GRAS 362 WkdrpLvsvSaW 373 Wk+r L++vS W Brast10G197900.1.p 614 WKGRVLYAVSTW 625 ********** PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	58.305	227	606	IPR005202	Transcription factor GRAS
Pfam	PF03514	6.7E-103	254	625	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 637 aa Download sequence Send to blast
MAAIQEELLD VVESAPLPPS VVLDVDLPPM THGDSKRPQD DLSMAYISCM LMEDDIIDKF 60 SYQYPDHPKL LQAEQPFAQI LSADATTSSN VEESSASDVL ASALLPNKVK HPAFFSNGTG 120 AVESSSTLFP SESSTNMDML SSMAFFKGME EANMFLPRGN RMVGGRGRKN RFDMDGEIEG 180 CMGRSSKQIV LVHNYLDKEA TALKMLDQLV LNGDDTCPGE MQEVLINKEN VVAQKRIRRR 240 GRGSARHMVV TDLETLLIRC AEAISSNDRR SASELLERIK RYSSPTGDGR QRLAHYFAKG 300 LEARLSGTGS QLYSSCMGRR TCAVELIKAY HLYNATCCFV KMTLLFSNMT IYKAVEGRRK 360 LHIVQYGINT GLQWPELIRW LANREGGPPE LRITGINMPQ PGFNLAEQID ETGHRLSNYA 420 SEFGVPFKFH AIIAQLEAVQ AEDLHIDPDE VLIVNSLFQF RILMDESLTF DKVNPRDMVL 480 NNIRMMKPSM FVHAITNGSY SAAVFMTRFR KVLSHFTSLF DMMETIIPGN NDKRLQVERY 540 FFARSAMNII ACEGAERVER PQNYREWQAR NHRAGLRQLP LDPDIVLMVK DKVKNQYHKH 600 FMINEDHRWL LQGWKGRVLY AVSTWAADNA GGSELP*

Sequence ? help Back to Top

Protein Sequence Length: 637 aa Download sequence Send to blast

MAAIQEELLD VVESAPLPPS VVLDVDLPPM THGDSKRPQD DLSMAYISCM LMEDDIIDKF  60
SYQYPDHPKL LQAEQPFAQI LSADATTSSN VEESSASDVL ASALLPNKVK HPAFFSNGTG  120
AVESSSTLFP SESSTNMDML SSMAFFKGME EANMFLPRGN RMVGGRGRKN RFDMDGEIEG  180
CMGRSSKQIV LVHNYLDKEA TALKMLDQLV LNGDDTCPGE MQEVLINKEN VVAQKRIRRR  240
GRGSARHMVV TDLETLLIRC AEAISSNDRR SASELLERIK RYSSPTGDGR QRLAHYFAKG  300
LEARLSGTGS QLYSSCMGRR TCAVELIKAY HLYNATCCFV KMTLLFSNMT IYKAVEGRRK  360
LHIVQYGINT GLQWPELIRW LANREGGPPE LRITGINMPQ PGFNLAEQID ETGHRLSNYA  420
SEFGVPFKFH AIIAQLEAVQ AEDLHIDPDE VLIVNSLFQF RILMDESLTF DKVNPRDMVL  480
NNIRMMKPSM FVHAITNGSY SAAVFMTRFR KVLSHFTSLF DMMETIIPGN NDKRLQVERY  540
FFARSAMNII ACEGAERVER PQNYREWQAR NHRAGLRQLP LDPDIVLMVK DKVKNQYHKH  600
FMINEDHRWL LQGWKGRVLY AVSTWAADNA GGSELP*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hyz_A	5e-44	257	625	8	374	GRAS family transcription factor containing protein, expressed
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Brast10G197900.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003575624.3	0.0	scarecrow-like protein 33
TrEMBL	A0A2K2CGS7	0.0	A0A2K2CGS7_BRADI; Uncharacterized protein
STRING	BRADI4G09235.1	0.0	(Brachypodium distachyon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP231	31	297

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G29060.1	1e-131	GRAS family protein

Link Out ? help Back to Top
Phytozome	Brast10G197900.1.p