PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Brast10G162400.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | bHLH | ||||||||
Protein Properties | Length: 246aa MW: 26588 Da PI: 7.807 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 33.8 | 6.2e-11 | 168 | 208 | 10 | 55 |
HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 ++RR+riN+++ L++l+P+ +K++ +++Le+Av+Y+k Lq Brast10G162400.1.p 168 KKRRERINEKLRVLQQLIPNG-----TKVDISTMLEEAVQYVKFLQ 208 9******************97.....8******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 2.88E-14 | 157 | 222 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 14.805 | 158 | 207 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 3.2E-13 | 158 | 221 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 5.7E-11 | 164 | 213 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 9.69E-12 | 167 | 212 | No hit | No description |
Pfam | PF00010 | 3.6E-8 | 168 | 208 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 246 aa Download sequence Send to blast |
MEAKCAAIWS SVDARSEESE MIAHLQSMFW SSSDVAVNLC SSNTSGSACV TASTVPSSVF 60 LPLGNDESYG AAPLHQAITG HKRISHMDEQ MKKTRKKSRR VPSVSKALGS SLVDNQTNAD 120 IVNQSSSSCC SSGEDSIGTS EKSIVPNQSD NTSGCKRPSK NMQSLYAKKR RERINEKLRV 180 LQQLIPNGTK VDISTMLEEA VQYVKFLQLQ IKVLSSDETW MYAPLAYNGM DIGLALALGT 240 AANQE* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 91 | 99 | KKTRKKSRR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Brast10G162400.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003575800.1 | 1e-162 | transcription factor bHLH139 isoform X1 | ||||
TrEMBL | I1IK27 | 1e-160 | I1IK27_BRADI; Uncharacterized protein | ||||
STRING | BRADI4G12615.1 | 1e-161 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP14002 | 25 | 28 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G14760.1 | 1e-43 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Brast10G162400.1.p |