PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Brast10G125600.5.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | GRF | ||||||||
Protein Properties | Length: 328aa MW: 35072.1 Da PI: 8.8921 | ||||||||
Description | GRF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRC | 70.1 | 2.8e-22 | 133 | 175 | 3 | 45 |
WRC 3 epgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 epgrCrRtDGKkWRCsr+ ++++k+CErH++rgr+rsrk++e Brast10G125600.5.p 133 EPGRCRRTDGKKWRCSRDSVGDQKYCERHINRGRQRSRKHVEG 175 9***************************************996 PP | |||||||
2 | QLQ | 61.8 | 1.8e-21 | 78 | 114 | 1 | 37 |
QLQ 1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 ++FT++Q+++L++Q+l+yK++aan+PvP+ Ll++i++ Brast10G125600.5.p 78 GPFTPTQWMELEHQALIYKHIAANAPVPSSLLLPIKR 114 59*********************************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00951 | 4.8E-13 | 78 | 114 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
Pfam | PF08880 | 7.5E-16 | 79 | 112 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51666 | 23.754 | 79 | 114 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51667 | 23.23 | 131 | 175 | IPR014977 | WRC domain |
Pfam | PF08879 | 2.0E-19 | 133 | 174 | IPR014977 | WRC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005524 | Molecular Function | ATP binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 328 aa Download sequence Send to blast |
MLSSCGGGGH PNSPQKHGRC DEQGGQDGFL GLAGASLPPP PSCSFLGSTG SSGAQMLSFS 60 SNDAAGASMQ GVLARVRGPF TPTQWMELEH QALIYKHIAA NAPVPSSLLL PIKRSLNPWV 120 GWGPFRPGGA DIEPGRCRRT DGKKWRCSRD SVGDQKYCER HINRGRQRSR KHVEGRKVTP 180 TIAEPAMVVS GGVSSRSHAA WQQQVEGLAA NVAVPFPGQS NRELLEKQNV VEQSSVPTPM 240 DPFDFPSSHS SSSRDEVAFS PLKLHHDLGQ AFSVYGAGSS SEKGNRSQPQ ESWSPVTRET 300 LDDGPLGEVF RSKSCQSPYG ASQQTKN* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that plays a regulatory role in gibberellin-induced stem elongation. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Brast10G125600.5.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003577465.2 | 0.0 | growth-regulating factor 8 isoform X2 | ||||
Swissprot | Q6AWY1 | 1e-128 | GRF8_ORYSJ; Growth-regulating factor 8 | ||||
TrEMBL | A0A0Q3H452 | 0.0 | A0A0Q3H452_BRADI; Uncharacterized protein | ||||
STRING | BRADI4G16450.1 | 0.0 | (Brachypodium distachyon) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37740.1 | 5e-46 | growth-regulating factor 2 |
Link Out ? help Back to Top | |
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Phytozome | Brast10G125600.5.p |
Publications ? help Back to Top | |||
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