PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Brast10G125400.1.p

Organism

Brachypodium stacei

Taxonomic ID

1071399

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

G2-like

Protein Properties

Length: 534aa MW: 56650.1 Da PI: 6.9831

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Brast10G125400.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	28.1	4.5e-09	161	188	1	28
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAt 28 kpr+rWt+eLH F+eav+qLG + Brast10G125400.1.p 161 KPRVRWTKELHGMFLEAVNQLGIDMNSN 188 79*******************7555555 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.40.50.2300	6.2E-6	119	161	No hit	No description
SuperFamily	SSF52172	6.64E-5	120	163	IPR011006	CheY-like superfamily
Gene3D	G3DSA:1.10.10.60	3.1E-8	162	189	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 534 aa Download sequence Send to blast
MQIGVGSSSP EGKRRGNGTS EKHIGVGAAS GRRARVSTLL LEEVVVVRRG VDGDGRRGGV 60 RSLAAPPPPP PRSGRTGEGG AARSLASARR ACVPAFLLEE VRGGVWPEET GGGGVPDRVG 120 MISANEEIET VMKGITHGAC DYLVKPLCAK EVKNIWPHIT KPRVRWTKEL HGMFLEAVNQ 180 LGIDMNSNPS ANASIRLSSS FNTIKEPESF EYYRGYGQYQ PSPNNFSTRI DSHSTSSFGA 240 NNVMPTQSKQ RNNLGMGQIV NGGMLLKDFA SASSLLLDAR QHTSSSNSYA SMPADAFSSF 300 CSCGISHSNI LFGNPLEVGI GNNSGNYFAR IPNDGLSVHA NQFLVQPSPH LRHEHSSQKN 360 PCGDTRGIGN SLQDAKLPDH GNTDGRESQA NISNINHLTS LANASAGNKP MCQNKLQNQM 420 GAILSTSEKN VSFNVASNDT SSIQLLNDNS ALGITSAIGS YTLPNLQMVS YVTSIQMLNG 480 GGEGGILSMQ EQGSVDQEAA TDQPNNNNAP LIGTNELDGS CSWDDILAML NEK*

Sequence ? help Back to Top

Protein Sequence Length: 534 aa Download sequence Send to blast

MQIGVGSSSP EGKRRGNGTS EKHIGVGAAS GRRARVSTLL LEEVVVVRRG VDGDGRRGGV  60
RSLAAPPPPP PRSGRTGEGG AARSLASARR ACVPAFLLEE VRGGVWPEET GGGGVPDRVG  120
MISANEEIET VMKGITHGAC DYLVKPLCAK EVKNIWPHIT KPRVRWTKEL HGMFLEAVNQ  180
LGIDMNSNPS ANASIRLSSS FNTIKEPESF EYYRGYGQYQ PSPNNFSTRI DSHSTSSFGA  240
NNVMPTQSKQ RNNLGMGQIV NGGMLLKDFA SASSLLLDAR QHTSSSNSYA SMPADAFSSF  300
CSCGISHSNI LFGNPLEVGI GNNSGNYFAR IPNDGLSVHA NQFLVQPSPH LRHEHSSQKN  360
PCGDTRGIGN SLQDAKLPDH GNTDGRESQA NISNINHLTS LANASAGNKP MCQNKLQNQM  420
GAILSTSEKN VSFNVASNDT SSIQLLNDNS ALGITSAIGS YTLPNLQMVS YVTSIQMLNG  480
GGEGGILSMQ EQGSVDQEAA TDQPNNNNAP LIGTNELDGS CSWDDILAML NEK*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Brast10G125400.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010237652.2	1e-144	uncharacterized protein LOC100826162
TrEMBL	A0A0Q3EKV8	0.0	A0A0Q3EKV8_BRADI; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP50297	2	2

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G31920.1	4e-14	response regulator 10

Link Out ? help Back to Top
Phytozome	Brast10G125400.1.p