PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Brast10G114300.1.p

Organism

Brachypodium stacei

Taxonomic ID

1071399

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

GRAS

Protein Properties

Length: 743aa MW: 80500.9 Da PI: 6.5828

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Brast10G114300.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	421.3	8e-129	377	741	1	374
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPil 91 lv+lLl+cA++vs+gd++ a + L l+ asp gd+mqR+a+yf+ ALaarl+ ++++ + + + + s ++l++++++++++P++ Brast10G114300.1.p 377 LVHLLLACADFVSKGDQASALRHLHLLRRVASPLGDSMQRVASYFADALAARLSLTCPSAVVSPGGAPFPFPPSPDTLKIYQILYQACPYI 467 68***************************************************9988877775555555569************* PP GRAS 92 kfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlv 182 kf+h+taNqaI ea++g++rvH++D+di qG QWpa+lqaLa+Rp+gpp+lR+Tgvg+ + +++etg+ La++A++l+vpfef++ v Brast10G114300.1.p 468 KFAHFTANQAIFEAFQGDDRVHVVDLDILQGYQWPAFLQALAARPGGPPTLRLTGVGH----PAAAVRETGRHLASLAASLRVPFEFHAAV 554 ******************************************************....88*********************** PP GRAS 183 akrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdslea 273 a++le l++ +L+ + gEalaVn v +lhr++ ++l+ +L+++++ Pk++++veqea hn++ Fl rfleal+yysa+fdsl+a Brast10G114300.1.p 555 ADKLERLRPATLQRRVGEALAVNAVNRLHRVP--GAHLAP----LLSMIRDQAPKIMTLVEQEAGHNGPYFLGRFLEALHYYSAIFDSLDA 639 ***************************9..555555....******************************************* PP GRAS 274 klpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWk 363 ++p++s r+kvE+ ll++ei+nvvacegaer++rhe+l +Wr+ +e GF++vpls a+ q + ll ++ +dgyr++e++g+l+lgW+ Brast10G114300.1.p 640 TFPADSAPRMKVEQCLLAPEIRNVVACEGAERVARHERLDRWRRIMEGRGFEAVPLSPAAVGQSQVLLGLYGaGDGYRLNEDKGCLLLGWQ 730 *************************************************************************************** PP GRAS 364 drpLvsvSaWr 374 dr+++ +SaWr Brast10G114300.1.p 731 DRAIIGASAWR 741 ********8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	67.414	351	720	IPR005202	Transcription factor GRAS
Pfam	PF03514	2.8E-126	377	741	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 743 aa Download sequence Send to blast
MCSRMGTVNC PDTTSSVKLQ QQQGPTSPTA SFSESNIVAS STDPDAIDAL AGLQALRFDG 60 DIDGEIQSPD LAMWESLFAD QIGASGADFL MSSPRRDFSP LRDFMVSSPK RDYMVSSPKR 120 DYMMSSPKRD YMMSSPKRDY MVSSPKREMG VSSPRRSTFS NLYSSTINQA NQQSYMHSME 180 GSPQMQYSNL ASHGNKGKSS PSPLHKVYIN NINAHSNSSK SNGPSSLSCS SSYTHGENLP 240 LPSMDPFLEE YKEGYLAYQL PEKAGGSESA GTTAPISSQL PTLSECLAMP EPGYGGGDVE 300 AAAAMVGRGI QVGGLQQPDH LYYAGQFGAA EESLSSLQHQ MAKPEQWADS SSLHSMLGSV 360 IQSEAHQQQD QDSGLQLVHL LLACADFVSK GDQASALRHL HLLRRVASPL GDSMQRVASY 420 FADALAARLS LTCPSAVVSP GGAPFPFPPS PDTLKIYQIL YQACPYIKFA HFTANQAIFE 480 AFQGDDRVHV VDLDILQGYQ WPAFLQALAA RPGGPPTLRL TGVGHPAAAV RETGRHLASL 540 AASLRVPFEF HAAVADKLER LRPATLQRRV GEALAVNAVN RLHRVPGAHL APLLSMIRDQ 600 APKIMTLVEQ EAGHNGPYFL GRFLEALHYY SAIFDSLDAT FPADSAPRMK VEQCLLAPEI 660 RNVVACEGAE RVARHERLDR WRRIMEGRGF EAVPLSPAAV GQSQVLLGLY GAGDGYRLNE 720 DKGCLLLGWQ DRAIIGASAW RC*

Sequence ? help Back to Top

Protein Sequence Length: 743 aa Download sequence Send to blast

MCSRMGTVNC PDTTSSVKLQ QQQGPTSPTA SFSESNIVAS STDPDAIDAL AGLQALRFDG  60
DIDGEIQSPD LAMWESLFAD QIGASGADFL MSSPRRDFSP LRDFMVSSPK RDYMVSSPKR  120
DYMMSSPKRD YMMSSPKRDY MVSSPKREMG VSSPRRSTFS NLYSSTINQA NQQSYMHSME  180
GSPQMQYSNL ASHGNKGKSS PSPLHKVYIN NINAHSNSSK SNGPSSLSCS SSYTHGENLP  240
LPSMDPFLEE YKEGYLAYQL PEKAGGSESA GTTAPISSQL PTLSECLAMP EPGYGGGDVE  300
AAAAMVGRGI QVGGLQQPDH LYYAGQFGAA EESLSSLQHQ MAKPEQWADS SSLHSMLGSV  360
IQSEAHQQQD QDSGLQLVHL LLACADFVSK GDQASALRHL HLLRRVASPL GDSMQRVASY  420
FADALAARLS LTCPSAVVSP GGAPFPFPPS PDTLKIYQIL YQACPYIKFA HFTANQAIFE  480
AFQGDDRVHV VDLDILQGYQ WPAFLQALAA RPGGPPTLRL TGVGHPAAAV RETGRHLASL  540
AASLRVPFEF HAAVADKLER LRPATLQRRV GEALAVNAVN RLHRVPGAHL APLLSMIRDQ  600
APKIMTLVEQ EAGHNGPYFL GRFLEALHYY SAIFDSLDAT FPADSAPRMK VEQCLLAPEI  660
RNVVACEGAE RVARHERLDR WRRIMEGRGF EAVPLSPAAV GQSQVLLGLY GAGDGYRLNE  720
DKGCLLLGWQ DRAIIGASAW RC*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	2e-86	362	740	4	378	Protein SCARECROW
5b3h_A	2e-86	362	740	3	377	Protein SCARECROW
5b3h_D	2e-86	362	740	3	377	Protein SCARECROW
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that functions in mycorrhizal specific signaling (PubMed:23122845). Required for Myc factor signaling from mycorrhizal fungi, but has no function in Nod factor signaling from rhizobial bacteria (PubMed:23122845). Regulates the expression of RAM2, a glycerol-3-phosphate acyl transferase that promotes cutin biosynthesis to enhance mycorrhizal hyphopodia formation (PubMed:23122845). {ECO:0000269\|PubMed:23122845}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Brast10G114300.1.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced in roots during colonization by arbuscular mycorrhizal fungi. {ECO:0000269\|PubMed:23122845}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_014757818.2	0.0	DELLA protein GAI isoform X1
Swissprot	G7L166	0.0	RAM1_MEDTR; GRAS family protein RAM1
TrEMBL	A0A0Q3HJI1	0.0	A0A0Q3HJI1_BRADI; Uncharacterized protein
STRING	BRADI4G18390.1	0.0	(Brachypodium distachyon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP9221	31	41

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G66350.1	1e-101	RGA-like 1

Link Out ? help Back to Top
Phytozome	Brast10G114300.1.p

Publications ? help Back to Top
Tang H, et al. An improved genome release (version Mt4.0) for the model legume Medicago truncatula. BMC Genomics, 2014. 15: p. 312 [PMID:24767513] Pecrix Y, et al. Whole-genome landscape of Medicago truncatula symbiotic genes. Nat Plants, 2018. 4(12): p. 1017-1025 [PMID:30397259]