PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast10G040200.2.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family MYB_related
Protein Properties Length: 174aa    MW: 19853.4 Da    PI: 6.6197
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast10G040200.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.74e-16243548
                        -HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  5 TteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        T+ E+ l++++++++G++ W++Iar+++ gRt++++k++w++++
  Brast10G040200.2.p  2 TAHEERLILELHARWGNR-WSRIARRLP-GRTDNEIKNYWRTHM 43
                        99****************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd001672.30E-12143No hitNo description
PROSITE profilePS5129423.739147IPR017930Myb domain
SMARTSM007174.4E-11145IPR001005SANT/Myb domain
SuperFamilySSF466891.17E-12249IPR009057Homeodomain-like
PfamPF002496.5E-14242IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.3E-19244IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009723Biological Processresponse to ethylene
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0010200Biological Processresponse to chitin
GO:0046686Biological Processresponse to cadmium ion
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 174 aa     Download sequence    Send to blast
MTAHEERLIL ELHARWGNRW SRIARRLPGR TDNEIKNYWR THMRKKAQER KRNMSPSSSS  60
SSLTYQSCHP ETPSIAGIDE QELHGGSNCI TSILKGMPAD MDGYLMDQIW MEIEAPSGPS  120
FHDGKDNAYS SHSGPLLQPP MWDCYYPEAC WKMDDEIKIS PQLGYSKGMD PCY*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00600PBMTransfer from AT5G59780Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast10G040200.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0095361e-157BT009536.1 Triticum aestivum clone wr1.pk0139.g11:fis, full insert mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010237138.11e-100myb-related protein MYBAS2
SwissprotQ4JL765e-85MYBA2_ORYSJ; Myb-related protein MYBAS2
TrEMBLI1IHB03e-99I1IHB0_BRADI; Uncharacterized protein
TrEMBLI1IHB21e-100I1IHB2_BRADI; Uncharacterized protein
STRINGBRADI4G04050.11e-100(Brachypodium distachyon)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G59780.14e-35myb domain protein 59
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]