PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast10G030100.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family B3
Protein Properties Length: 383aa    MW: 43809.9 Da    PI: 5.7554
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast10G030100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B347.24.1e-1532123199
                         EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
                  B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                         ffk +     ++++ +++p k a+++  +   +      l+ +sg++W v +  +k  ++ +++ GW +F+ka++L+e+D v+F+++g+s+
  Brast10G030100.1.p  32 FFKLM--TGDFEQH-ISIPEKVASKFmrQ--MQIVEGFDLKAPSGETWHVGV--TKVANELFFKLGWGDFAKAHELQENDLVLFTFTGNSS 115
                         56655..4455555.9*******999663..4444458999***********..**********************************999 PP

                         E..EEEEE-S CS
                  B3  90 felvvkvfrk 99 
                         f   v +f++
  Brast10G030100.1.p 116 F--DVLIFDA 123
                         9..9999986 PP
2B344.52.8e-14274350886
                         -HHHHTT-EE--HHH.HTT.---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
                  B3   8 sdvlksgrlvlpkkfaeeh.ggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 
                         s  +k   l +p +fa++h +++  +  ++ l    + ++W vk+ y ++s+r +  + W +Fv++n+L+egD+++F+l++
  Brast10G030100.1.p 274 SLQSKYTFLNIPVEFAADHlQSN--S-HDVLLIRpGREEKWYVKY-YHGSSNRGFKCQPWAKFVRDNRLREGDVCLFELIN 350
                         3334446799*********5433..3.35555552777*******.888888855555********************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019362.75E-1925126IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.64729124IPR003340B3 DNA binding domain
CDDcd100173.46E-1531122No hitNo description
Gene3DG3DSA:2.40.330.106.4E-1931126IPR015300DNA-binding pseudobarrel domain
SMARTSM010191.9E-932124IPR003340B3 DNA binding domain
PfamPF023622.3E-1232123IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.4E-18258368IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.14E-17262352IPR015300DNA-binding pseudobarrel domain
CDDcd100173.84E-13264370No hitNo description
SMARTSM010196.8E-7266372IPR003340B3 DNA binding domain
PROSITE profilePS5086312.407267372IPR003340B3 DNA binding domain
PfamPF023624.5E-12273350IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 383 aa     Download sequence    Send to blast
MMDEEGKVRC KRCREWQEHF YWEHMDVSKM RFFKLMTGDF EQHISIPEKV ASKFMRQMQI  60
VEGFDLKAPS GETWHVGVTK VANELFFKLG WGDFAKAHEL QENDLVLFTF TGNSSFDVLI  120
FDASGCEKLS SLFSGKMRKH FDDLGGQQVE QYSLIDDSDD NDDNDSDDND DNDSDEDDSE  180
SVPSLLVESS HKKASTSKKF SAKTKPRKEP SESPTSSSCD DVKHEASDED ESDHEPYYSR  240
SAKRLLDNEK QEIIRLASIH ADNPAFMTVL QMSSLQSKYT FLNIPVEFAA DHLQSNSHDV  300
LLIRPGREEK WYVKYYHGSS NRGFKCQPWA KFVRDNRLRE GDVCLFELIN CARRKTKKAA  360
TTTMVVHVTR RGKANGRFVA VG*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast10G030100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024318846.10.0LOW QUALITY PROTEIN: B3 domain-containing protein LOC_Os12g40080
SwissprotQ2QMT21e-120Y1223_ORYSJ; B3 domain-containing protein Os12g0592300
TrEMBLA0A0Q3EEB90.0A0A0Q3EEB9_BRADI; Uncharacterized protein
STRINGBRADI4G02990.11e-151(Brachypodium distachyon)
STRINGMLOC_23884.11e-153(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP56234179
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.14e-22B3 family protein