PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast10G030000.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family B3
Protein Properties Length: 493aa    MW: 56381.6 Da    PI: 8.5864
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast10G030000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B345.71.2e-14341151098
                         HHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
                  B3  10 vlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                          ++ + +++p k + + g +   +  ++le+++g++ +v +   k ++  vl++GW+ F++a +L+egDf+ F+++g+s f  +v +++
  Brast10G030000.1.p  34 DFR-NGVTIPEKLVCSVGVQ--IPEVVKLETPDGNTHTVHV--AKEQNNLVLRSGWEIFASAYELEEGDFLRFRYNGDSHF--KVEIYD 115
                         444.559******9899866..6678***************..**********************************9999..777765 PP
2B348.81.3e-152553421199
                         HHTT-EE--HHH.HTT---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
                  B3  11 lksgrlvlpkkfaeehggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                         l  g lv+ k++a+++ +++ ++  +tl +  ++++  v++   k++++y+l++GW +Fv++n+L+egD++vF++ ++++f++ v+v+++
  Brast10G030000.1.p 255 LVDGFLVICKDYASKYLLPS-KDEIITLCHaNRSKTLGVQF-EIKTDDTYILSAGWLGFVQDNELQEGDTCVFEVLSQRGFTMAVHVLKA 342
                         445789**********6654.33345555535556666666.2677778*************************9888********9986 PP
3B334.63.3e-114054881299
                         HTT-EE--HHH.HTT---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEEE-S CS
                  B3  12 ksgrlvlpkkfaeehggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkvfrk 99 
                         +s++++++ ++a+e+  +  e++t++l+  e+ +  + ++  +  ++r++l   W++Fv +n+L+ gD+++F+ +++ ++ +++v+++rk
  Brast10G030000.1.p 405 RSSIMSFSLDYAREYLPD--EGQTMRLYRpEERKPCKATY--KIMQERHWLV--WRRFVIENKLRLGDICLFEQMKStKKLRMMVHIIRK 488
                         45789999999*999544..5669****945558899999..999999***9..*******************88777*********998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019367.26E-1920119IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.108.2E-1921119IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.77124117IPR003340B3 DNA binding domain
CDDcd100178.04E-1825115No hitNo description
SMARTSM010191.1E-927117IPR003340B3 DNA binding domain
PfamPF023622.6E-1228114IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.106.8E-17239343IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.12E-17241342IPR015300DNA-binding pseudobarrel domain
CDDcd100171.69E-16244341No hitNo description
PROSITE profilePS5086311.307245343IPR003340B3 DNA binding domain
SMARTSM010191.0E-9246343IPR003340B3 DNA binding domain
PfamPF023627.8E-13256342IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.6E-14385489IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.51E-15386489IPR015300DNA-binding pseudobarrel domain
CDDcd100179.88E-14391487No hitNo description
SMARTSM010195.5E-7393489IPR003340B3 DNA binding domain
PfamPF023621.0E-8396488IPR003340B3 DNA binding domain
PROSITE profilePS508638.05453489IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 493 aa     Download sequence    Send to blast
MDKSCTGCKE YIAHQYWHHM NNRKKRFFKP MVGDFRNGVT IPEKLVCSVG VQIPEVVKLE  60
TPDGNTHTVH VAKEQNNLVL RSGWEIFASA YELEEGDFLR FRYNGDSHFK VEIYDLSACE  120
KESSCVAING NACFQKQSIP HDNPMRSPGD ERLATRHNGS CSNSCKTSKM NPAGSPARKP  180
TEKDTPPCKG SHTPSCKGSQ DPMDSVELRR ATRSCYVLAT GCNLTEAHKA EVDKLEQKNR  240
SEIPLYVKTM DRTSLVDGFL VICKDYASKY LLPSKDEIIT LCHANRSKTL GVQFEIKTDD  300
TYILSAGWLG FVQDNELQEG DTCVFEVLSQ RGFTMAVHVL KASYHHRPGF GPSANIFRPE  360
DNVRFSRFTN LEGLMKTKVY ERVEAIKSAI PIFVSIMLKS SIQPRSSIMS FSLDYAREYL  420
PDEGQTMRLY RPEERKPCKA TYKIMQERHW LVWRRFVIEN KLRLGDICLF EQMKSTKKLR  480
MMVHIIRKEE YC*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast10G030000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024318846.10.0LOW QUALITY PROTEIN: B3 domain-containing protein LOC_Os12g40080
SwissprotQ2QMT61e-146Y1208_ORYSJ; B3 domain-containing protein LOC_Os12g40080
TrEMBLA0A0Q3L1400.0A0A0Q3L140_BRADI; Uncharacterized protein
STRINGEMT089250.0(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP56234179
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.12e-21B3 family protein