PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast10G026300.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family bHLH
Protein Properties Length: 216aa    MW: 23264.7 Da    PI: 7.2037
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast10G026300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.81.4e-1194139455
                         HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         ++++  +rRR +iN+++ +L++l+P +       +s a++L ++++Y++sLq
  Brast10G026300.1.p  94 KKSKLAKRRRFKINEKLKTLQQLVPGC------EPSQASTLDQTIHYVRSLQ 139
                         567889********************9......79****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088810.89390138IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.97E-1393150IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.29E-1293143No hitNo description
PfamPF000105.7E-994139IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.9E-1394146IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.1E-1296144IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 216 aa     Download sequence    Send to blast
MTSSGDELVV DPSSGANFLE LSVDDYGQHP THEALLPTTP SDGEMVAWLY PIISHGDQKH  60
VSNDGVVEQN GRPKAPLKET MNKQLEENKL LTTKKSKLAK RRRFKINEKL KTLQQLVPGC  120
EPSQASTLDQ TIHYVRSLQH QVQAMSVVGC SMPPVPAAAS NRAALLGPPP MMVAPFVPML  180
PCPAHHPAVI RDAAVDLPAS SCACCWWPSS SSGLQ*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast10G026300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020398223.13e-22transcription factor PIF1
TrEMBLA0A0Q3EI221e-77A0A0Q3EI22_BRADI; Uncharacterized protein
STRINGSb08g020300.18e-21(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP164341012
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28800.12e-10bHLH family protein