PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast09G246800.2.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family ARF
Protein Properties Length: 949aa    MW: 105228 Da    PI: 6.3087
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast09G246800.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B367.61.8e-21144244199
                         EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS
                  B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 
                         f+k lt sd++++g +++p++ ae+       ++++++ ++l+++d++ + W++++i  ++++r++lt+GW+ Fv a++Lk+gD+v+F   
  Brast09G246800.2.p 144 FCKNLTASDTSTHGGFSVPRRAAEKLfpqldySMQPPN-QELIVRDLHDNMWTFRHI-YRQPKRHLLTTGWSLFVGAKRLKAGDSVLFI-- 230
                         89*********************999*****9555555.49***************7.5667799************************.. PP

                         SSSEE..EEEEE-S CS
                  B3  86 grsefelvvkvfrk 99 
                         ++++ +l+++v+r+
  Brast09G246800.2.p 231 RDEKSQLLLGVRRA 244
                         45677789999997 PP
2Auxin_resp116.52.2e-38269351183
          Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                         aahaas++s F+++YnPr+s+s Fvv++++++ka +v+ svGmRf m+fete+ss+rr++Gt+vgvsd+dp+rWpnSkWr+L+
  Brast09G246800.2.p 269 AAHAASSGSSFTIYYNPRTSPSPFVVPLARYNKANYVQQSVGMRFAMMFETEESSKRRYTGTIVGVSDYDPIRWPNSKWRNLQ 351
                         79*******************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019368.5E-42136272IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.107.4E-39137257IPR015300DNA-binding pseudobarrel domain
CDDcd100171.20E-18143243No hitNo description
PROSITE profilePS5086312.76144245IPR003340B3 DNA binding domain
PfamPF023625.0E-19144244IPR003340B3 DNA binding domain
SMARTSM010191.9E-20144245IPR003340B3 DNA binding domain
PfamPF065074.2E-34269351IPR010525Auxin response factor
PfamPF023096.7E-10842931IPR033389AUX/IAA domain
PROSITE profilePS5174525.592844928IPR000270PB1 domain
SuperFamilySSF542779.16E-9863923No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009733Biological Processresponse to auxin
GO:0009908Biological Processflower development
GO:0009942Biological Processlongitudinal axis specification
GO:0010305Biological Processleaf vascular tissue pattern formation
GO:0048364Biological Processroot development
GO:0048507Biological Processmeristem development
GO:0005634Cellular Componentnucleus
GO:0016020Cellular Componentmembrane
GO:0042802Molecular Functionidentical protein binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 949 aa     Download sequence    Send to blast
MASSQEKQPT FGVLRNAAAL LDEMQLLGEA QGAKKVINSE LWHACAGPLV FLPQRGSLVY  60
YFPQGHSEQV AATTRKVPNS RIPNYPNLPS QLLCQVHNIT MHADKETDEV YAQMTLQPVN  120
SETDVFPIPA LGSYPKSKHP PEYFCKNLTA SDTSTHGGFS VPRRAAEKLF PQLDYSMQPP  180
NQELIVRDLH DNMWTFRHIY RQPKRHLLTT GWSLFVGAKR LKAGDSVLFI RDEKSQLLLG  240
VRRATRQQTQ LSSSVLSTDS MHIGVLAAAA HAASSGSSFT IYYNPRTSPS PFVVPLARYN  300
KANYVQQSVG MRFAMMFETE ESSKRRYTGT IVGVSDYDPI RWPNSKWRNL QVEWDEHGYG  360
ERPERVSIWD IETPENALVF PSSSLNSKRQ CLPGYGVPGL EIGSVNMPSF TEIPTVLGNP  420
YGNLQHMPAV GSELAMMLLS QSGQNLGTPL SCHQSSYSSI IQNVKHNYVP PSTFGVSTGP  480
IKQESMHSNE AQQQLHTPKM RRGDLENCEV QPVTDSVSAS ELNVAVREPR NTDSYPSQSI  540
SEQNGKGEPK VKTRRSKKGP SRKTISENSE LSSAPSRVCD DQQHGFEVKL VAGDTQQINS  600
AINEDSSGAL THGNFARQLQ GQQVEQNGSL SPPKLESSKS PDGGKSVNSF PNQGCFSQFF  660
DGLDWMIQPS YYQDSNGIQS VSASENIFSS SANIPSTINI DTMEAFQNSC LSDCFPNSIQ  720
DFIGSPDLNS ITFMPPDMQN LDVQHDRSNL PSTSNSYVQM SFSEDSGNHM ESIQRSMNNT  780
SCSQPQATEG FDLGMYSKLP SLKETQVLSL PEIHNSSRGT SSCSMDVTDY SIDRSAKLLK  840
PPVRTYTKVQ KLGSVGRSID VTRYRDYREL RSAIASMFGL QGKLEHPGSS EWKLVYVDYE  900
NDVLLVGDDP WEEFINCVRC IRILSPSEVQ QMSESGMHVL NDCIQTDQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A0.01837431390Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00153DAPTransfer from AT1G19850Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast09G246800.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014750997.10.0auxin response factor 11 isoform X2
SwissprotQ01K260.0ARFK_ORYSI; Auxin response factor 11
SwissprotQ8S9830.0ARFK_ORYSJ; Auxin response factor 11
TrEMBLA0A0Q3P8130.0A0A0Q3P813_BRADI; Auxin response factor
STRINGBRADI5G25157.10.0(Brachypodium distachyon)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19850.10.0ARF family protein
Publications ? help Back to Top
  1. Shen C, et al.
    Functional analysis of the structural domain of ARF proteins in rice (Oryza sativa L.).
    J. Exp. Bot., 2010. 61(14): p. 3971-81
    [PMID:20693412]
  2. Indoliya Y, et al.
    Decoding regulatory landscape of somatic embryogenesis reveals differential regulatory networks between japonica and indica rice subspecies.
    Sci Rep, 2016. 6: p. 23050
    [PMID:26973288]