PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast09G246200.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family WOX
Protein Properties Length: 294aa    MW: 31331.6 Da    PI: 7.3219
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast09G246200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.62.2e-182080357
                        --SS--HHHHHHHHHHHHH..SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
            Homeobox  3 kRttftkeqleeLeelFek..nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                        +R+t+t+eq+++L el++    r p+ae+++++A +l    +++ ++V++WFqN++a+e++
  Brast09G246200.1.p 20 TRWTPTAEQVRILRELYYGlgIRSPNAEQIQRIAGRLrqygRIEGKNVFYWFQNHKARERH 80
                        7*****************7679*************************************95 PP
2Wus_type_Homeobox1092.7e-351982365
   Wus_type_Homeobox  3 rtRWtPtpeQikiLeelyk.sGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65
                         tRWtPt+eQ++iL+ely+  G+r+Pn+e+iqri+ +L++yG+ie+kNVfyWFQN+kaRer+k+
  Brast09G246200.1.p 19 GTRWTPTAEQVRILRELYYgLGIRSPNAEQIQRIAGRLRQYGRIEGKNVFYWFQNHKARERHKK 82
                        69****************988*****************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500719.9121581IPR001356Homeobox domain
SuperFamilySSF466892.89E-111584IPR009057Homeodomain-like
SMARTSM003896.8E-41785IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.604.4E-61885IPR009057Homeodomain-like
CDDcd000861.98E-52082No hitNo description
PfamPF000464.8E-162080IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010492Biological Processmaintenance of shoot apical meristem identity
GO:0080166Biological Processstomium development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 294 aa     Download sequence    Send to blast
MDGAAGGVRA AAAPCRASGT RWTPTAEQVR ILRELYYGLG IRSPNAEQIQ RIAGRLRQYG  60
RIEGKNVFYW FQNHKARERH KKRISNSLDD VSPNDGNNNS NNGGSLSGSG AGPASSAGLY  120
GAGNNGGGGS AHVQMDASAT ACWDSAAAMA NERSFMQQLQ EQDYMGARST AAMAPTPWPA  180
CFPAFSPYQM PPALTTREPE TLPLFPTGGG HQESVNGVHG GSYLELLQPN SQLCWGQQHH  240
HHQLLLQEQQ NYQYSSYSSQ PMMPTQDAAA AGLGGSTSLE LTLSSHYPAG SSM*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00265DAPTransfer from AT2G17950Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast09G246200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC6111206e-69KC611120.1 Oryza granulata WUS (WUS) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024311863.11e-118WUSCHEL-related homeobox 1B-like
TrEMBLA0A0Q3KYH21e-116A0A0Q3KYH2_BRADI; Uncharacterized protein
STRINGOB04G35540.16e-60(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP124653136
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G17950.12e-29WOX family protein