PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Brast09G234700.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | WOX | ||||||||
Protein Properties | Length: 244aa MW: 26094.7 Da PI: 10.2199 | ||||||||
Description | WOX family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 63.3 | 3.5e-20 | 87 | 146 | 3 | 57 |
--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 +R+++++eq+++Le+l++ r+p+a+++e+++++l +++ ++V++WFqN++a+e++ Brast09G234700.1.p 87 TRWNPSAEQIKVLEALYRGgMRTPNAAQIERITEELgrhgRIEGKNVFYWFQNHKARERQ 146 7*****************99**************************************97 PP | |||||||
2 | Wus_type_Homeobox | 114.8 | 4.2e-37 | 86 | 148 | 3 | 65 |
Wus_type_Homeobox 3 rtRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 tRW+P++eQik+Le+ly+ G+rtPn+++i+rit+eL ++G+ie+kNVfyWFQN+kaRerqkq Brast09G234700.1.p 86 MTRWNPSAEQIKVLEALYRGGMRTPNAAQIERITEELGRHGRIEGKNVFYWFQNHKARERQKQ 148 58***********************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 10.284 | 82 | 147 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.7E-7 | 84 | 151 | IPR001356 | Homeobox domain |
CDD | cd00086 | 9.13E-6 | 87 | 148 | No hit | No description |
Pfam | PF00046 | 9.2E-18 | 87 | 146 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 6.42E-13 | 87 | 152 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 5.5E-8 | 88 | 146 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0001944 | Biological Process | vasculature development | ||||
GO:0007165 | Biological Process | signal transduction | ||||
GO:0010067 | Biological Process | procambium histogenesis | ||||
GO:0051301 | Biological Process | cell division | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 244 aa Download sequence Send to blast |
MRLQHLHVGA YLENKKAARS SSSSSSSTSP APSTLSPPFP FAFQCLRPLA PKISLPEPRT 60 KAPDFGRVRT AAKLLACTVQ VAAGGMTRWN PSAEQIKVLE ALYRGGMRTP NAAQIERITE 120 ELGRHGRIEG KNVFYWFQNH KARERQKQKR AALLTLATAG AGLDDSSNSP PTPPETTTTK 180 DAAKKMEAMA CGDEATTSCK RRCKAWGDGG HGGAAATEAV AGDCRAVDDV TLELFPLRPH 240 GKA* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor which may be involved in developmental processes. {ECO:0000250}. | |||||
UniProt | Transcription factor which may be involved in developmental processes. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Brast09G234700.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AJ556181 | 6e-81 | AJ556181.1 Oryza sativa Japonica Group partial mRNA for homeobox protein HB3 (hb3 gene). | |||
GenBank | JF836159 | 6e-81 | JF836159.1 Oryza sativa Japonica Group WUSCHEL-like homeobox protein (WOX4) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010227318.2 | 1e-115 | WUSCHEL-related homeobox 4 | ||||
Swissprot | Q25AM2 | 1e-89 | WOX4_ORYSI; WUSCHEL-related homeobox 4 | ||||
Swissprot | Q7XTV3 | 1e-89 | WOX4_ORYSJ; WUSCHEL-related homeobox 4 | ||||
TrEMBL | I1J2M2 | 1e-114 | I1J2M2_BRADI; Uncharacterized protein | ||||
STRING | BRADI5G24080.1 | 1e-115 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP12692 | 30 | 35 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G46480.1 | 5e-36 | WUSCHEL related homeobox 4 |
Link Out ? help Back to Top | |
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Phytozome | Brast09G234700.1.p |