PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Brast09G194400.1.p

Organism

Brachypodium stacei

Taxonomic ID

1071399

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

G2-like

Protein Properties

Length: 268aa MW: 29647.6 Da PI: 8.2214

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Brast09G194400.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	105.2	3.7e-33	23	77	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+rlrWtpeLH+rFv+av++LGG++kAtPk++l+lm++kgLtl h+kSHLQkYR+ Brast09G194400.1.p 23 KQRLRWTPELHRRFVDAVAKLGGPDKATPKSVLRLMGIKGLTLFHLKSHLQKYRM 77 79****************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	12.737	20	80	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	1.2E-31	20	78	IPR009057	Homeodomain-like
SuperFamily	SSF46689	6.81E-17	23	78	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.4E-24	23	77	IPR006447	Myb domain, plants
Pfam	PF00249	1.2E-9	25	76	IPR001005	SANT/Myb domain
Pfam	PF14379	1.3E-21	123	166	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 268 aa Download sequence Send to blast
MFEGSYGGGC DAGAEAAVSR DPKQRLRWTP ELHRRFVDAV AKLGGPDKAT PKSVLRLMGI 60 KGLTLFHLKS HLQKYRMGRQ TKKAADLELA SSGGFAARDI SFSIGTPPLV PAGDDGTREI 120 SPTDTLRYQI QVQRKLHEQL EVQKKLHARI EAQGRYLKAI LEKAKNNISV DTNGSPNIES 180 TRSQFMDFNL DLLGLMDNGT QMYEENSEQL MKAISDNNLK DNNLDFQLYD VGSQEAKNVR 240 CTPRTEDLLL LDLNIKGGHD LSSTGMQ*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4r_A	2e-21	23	79	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	2e-21	23	79	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	2e-21	23	79	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	2e-21	23	79	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Brast09G194400.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003580464.2	1e-175	LOW QUALITY PROTEIN: myb family transcription factor PHL11
TrEMBL	I1J1D6	1e-176	I1J1D6_BRADI; Uncharacterized protein
STRING	BRADI5G20520.1	1e-177	(Brachypodium distachyon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3940	34	70

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G45580.1	3e-56	G2-like family protein

Link Out ? help Back to Top
Phytozome	Brast09G194400.1.p