PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Brast09G188600.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | C2H2 | ||||||||
Protein Properties | Length: 185aa MW: 19787.2 Da PI: 7.1958 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 14.3 | 0.00011 | 63 | 85 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C C + F++ L H+++H Brast09G188600.1.p 63 YTCAFCRREFRSAQALGGHMNVH 85 9********************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 2.61E-6 | 60 | 89 | No hit | No description |
PROSITE profile | PS50157 | 11.011 | 63 | 90 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 65 | 85 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 185 aa Download sequence Send to blast |
MAPASSSETK HITLHNFLKQ QHLLQQQRLK PAAVLWSWPV PTRAAPAHDE DADGGASWPP 60 RSYTCAFCRR EFRSAQALGG HMNVHRRDRA KMRGHYAAAA ALAPPSSPSP AEDLQPAAAE 120 YALLYPVLNS SNGARAVFIP AAAGGGGNVL LSAAPMELAA RRCDLSDDDE NDSSIDLELR 180 LGWP* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1njq_A | 1e-13 | 58 | 85 | 2 | 29 | superman protein |
2l1o_A | 1e-13 | 58 | 85 | 2 | 29 | Transcriptional regulator SUPERMAN |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Brast09G188600.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010227240.1 | 7e-96 | probable transcriptional regulator RABBIT EARS | ||||
TrEMBL | I1J156 | 2e-94 | I1J156_BRADI; Uncharacterized protein | ||||
STRING | BRADI5G19930.1 | 3e-95 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP11852 | 26 | 33 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G17810.1 | 5e-22 | C2H2 family protein |
Link Out ? help Back to Top | |
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Phytozome | Brast09G188600.1.p |