PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Brast09G164200.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | ERF | ||||||||
Protein Properties | Length: 195aa MW: 21320.7 Da PI: 5.3013 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 53.9 | 4.5e-17 | 43 | 91 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y GVr + +grWv eIr+p++ + r++lg+fg+ae+Aa+a++ a+++++g Brast09G164200.1.p 43 YYGVRMRN-WGRWVTEIREPRK---KSRIWLGTFGSAEKAARAHDVAALAIKG 91 77***998.**********843...6***********************9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 5.50E-29 | 41 | 101 | No hit | No description |
SuperFamily | SSF54171 | 1.9E-20 | 41 | 100 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 1.8E-30 | 42 | 105 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.1E-29 | 42 | 100 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 21.641 | 42 | 99 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 4.8E-12 | 43 | 91 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 7.0E-9 | 43 | 54 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 7.0E-9 | 65 | 81 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 195 aa Download sequence Send to blast |
MKDTHKPRSQ TSPATTFSSS STLSSSSVGA NKRPRKEGRQ STYYGVRMRN WGRWVTEIRE 60 PRKKSRIWLG TFGSAEKAAR AHDVAALAIK GPAAHLNFPD LMHLLPRAAS AEPKDVQEAA 120 ALAAAMDFPG DTDGKNPENT SDTQVVLPQP PPPHDEAGLE FDSSSDLPSD SPWVADDNMY 180 IDDVFNLEDL MLWD* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 7e-15 | 40 | 99 | 12 | 72 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Brast09G164200.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003581499.1 | 1e-110 | ethylene-responsive transcription factor ERF039 | ||||
Swissprot | Q9M080 | 2e-38 | ERF43_ARATH; Ethylene-responsive transcription factor ERF043 | ||||
TrEMBL | I1J0C1 | 1e-109 | I1J0C1_BRADI; Uncharacterized protein | ||||
STRING | BRADI5G17630.1 | 1e-109 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP159 | 35 | 354 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G32800.1 | 2e-40 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Brast09G164200.1.p |
Publications ? help Back to Top | |||
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