PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast09G164100.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family ERF
Protein Properties Length: 252aa    MW: 26200 Da    PI: 4.7962
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast09G164100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.42e-1974123255
                 AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                          y+GVr +  +g+Wv+eIr+p++   + r++lg+f+t+e+Aa+a++aa+ +++g
  Brast09G164100.1.p  74 TYRGVRMRT-WGKWVSEIREPRK---KSRIWLGTFDTPEMAARAHDAAAIAIKG 123
                         69****998.**********843...6**********************99887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003803.9E-3374140IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.7E-3074135IPR001471AP2/ERF domain
PfamPF008473.6E-1374123IPR001471AP2/ERF domain
PROSITE profilePS5103222.94574134IPR001471AP2/ERF domain
SuperFamilySSF541715.75E-2074134IPR016177DNA-binding domain
CDDcd000185.53E-1975136No hitNo description
PRINTSPR003671.1E-107586IPR001471AP2/ERF domain
PRINTSPR003671.1E-1097113IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 252 aa     Download sequence    Send to blast
MEQEQVLVSL PQVSNGCTCS SGSNATSSSS STLNASSPSS GDSAGSAGSD VSGNSNDNNN  60
KTKKRPRRDL KHPTYRGVRM RTWGKWVSEI REPRKKSRIW LGTFDTPEMA ARAHDAAAIA  120
IKGRAAAASL LNFPALAHEL PRAASAAPKD VQAAAALAAA THCPAVAAVV LSPSPDATIG  180
VDEQESQEPA AGNGCVGGLD LDLTFFDAPD ALLAGFGFTL PEPPSYCGSP WDDAPVDDDL  240
FFGEPLPLWE H*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-17711341172Ethylene-responsive transcription factor ERF096
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast09G164100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7278641e-91KJ727864.1 Zea mays clone pUT5956 AP2-EREBP transcription factor (EREB185) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003581498.11e-100ethylene-responsive transcription factor ERF039
TrEMBLI1J0C02e-98I1J0C0_BRADI; Uncharacterized protein
STRINGBRADI5G17620.13e-99(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP15935354
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11590.12e-24ERF family protein