PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast09G156300.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family YABBY
Protein Properties Length: 264aa    MW: 28316 Da    PI: 7.5282
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast09G156300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY201.33.9e-62252194170
               YABBY   4 fssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkee........................ 70 
                         f   eq+Cyv+CnfC+tilav vP +slfk+v+vrCGhC++llsvnl+      aa s+l     ++                        
  Brast09G156300.1.p  25 FAEQEQLCYVHCNFCDTILAVGVPCSSLFKTVAVRCGHCANLLSVNLRSLLLPAAAPSQLPF--GQPlisptspasphglldemssfqaps 113
                         67889******************************************999987777777643..22233457899999*888888877666 PP

               YABBY  71 ..lleelkveeenlksnvekeesastsvssekl...senedeevprvpp...virPPekrqrvPsaynrfikeeiqrikasnPdishreaf 153
                           l+e+   + +++  + +++++a ++ +++++   +  ++e  pr        + PekrqrvPsaynrfik+eiqrika+nPdi+hreaf
  Brast09G156300.1.p 114 slLTEQSSPNVSSI--TSSNNSCAINTPTAMSMppeKAAQREPQPRKNAssgSTKHPEKRQRVPSAYNRFIKDEIQRIKANNPDITHREAF 202
                         43222222222222..22222222222222233543334444445543333479************************************* PP

               YABBY 154 saaaknWahfPkihfgl 170
                         saaaknWahfP+ihfgl
  Brast09G156300.1.p 203 SAAAKNWAHFPHIHFGL 219
                         ***************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046901.9E-6727219IPR006780YABBY protein
SuperFamilySSF470951.26E-8156212IPR009071High mobility group box domain
Gene3DG3DSA:1.10.30.102.0E-5165213IPR009071High mobility group box domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009909Biological Processregulation of flower development
GO:0009933Biological Processmeristem structural organization
GO:0009944Biological Processpolarity specification of adaxial/abaxial axis
GO:0010093Biological Processspecification of floral organ identity
GO:0010154Biological Processfruit development
GO:0010158Biological Processabaxial cell fate specification
GO:0010159Biological Processspecification of organ position
GO:0010450Biological Processinflorescence meristem growth
GO:1902183Biological Processregulation of shoot apical meristem development
GO:2000024Biological Processregulation of leaf development
Sequence ? help Back to Top
Protein Sequence    Length: 264 aa     Download sequence    Send to blast
MMSPAESSET SFPDHLAQQQ QQHPFAEQEQ LCYVHCNFCD TILAVGVPCS SLFKTVAVRC  60
GHCANLLSVN LRSLLLPAAA PSQLPFGQPL ISPTSPASPH GLLDEMSSFQ APSSLLTEQS  120
SPNVSSITSS NNSCAINTPT AMSMPPEKAA QREPQPRKNA SSGSTKHPEK RQRVPSAYNR  180
FIKDEIQRIK ANNPDITHRE AFSAAAKNWA HFPHIHFGLM PDQALRKASI QSQDAAGDCM  240
LFKDSLYAAA AAAAASSMGV TPF*
Functional Description ? help Back to Top
Source Description
UniProtMay be involved in leaf cell growth and differentiation, rather than abaxial cell fate determination. {ECO:0000250}.
UniProtMay be involved in leaf cell growth and differentiation, rather than abaxial cell fate determination. {ECO:0000269|PubMed:17351053}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00620PBMTransfer from AT2G45190Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast09G156300.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by WOX3. {ECO:0000269|PubMed:17351053}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010240181.11e-166protein YABBY 5
SwissprotQ01JG21e-124YAB5_ORYSI; Protein YABBY 5
SwissprotQ0JBF01e-124YAB5_ORYSJ; Protein YABBY 5
TrEMBLI1J0381e-165I1J038_BRADI; Uncharacterized protein
STRINGBRADI5G16910.11e-166(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP144538121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45190.12e-51YABBY family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Khanday I, et al.
    Genome-Wide Targets Regulated by the OsMADS1 Transcription Factor Reveals Its DNA Recognition Properties.
    Plant Physiol., 2016. 172(1): p. 372-88
    [PMID:27457124]