PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast09G131600.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family CO-like
Protein Properties Length: 342aa    MW: 35996.9 Da    PI: 5.1612
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast09G131600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box23.21.5e-072052437
            zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkgH 37
                        r C+ +  + ++lfC+ +  +lC+ C    H gH
  Brast09G131600.1.p 20 RACDACAVEAARLFCRADAAFLCAGCDARAH-GH 52
                        67*****999********************9.76 PP
2zf-B_box24.26.9e-0859104342
            zf-B_box   3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 
                          + C+ +e+ ++   C+ +   lC  C   +H        H++vp+
  Brast09G131600.1.p  59 VWLCEVCEHAPAAVTCKADAAALCGACDADIHAAnplarrHERVPV 104
                         679*****************************66888889999986 PP
3CCT706.2e-24243285143
                 CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkq 43 
                         Rea+l+RY+eKrk+R+FeK+irY+sRKa+Ae+RpRvKGrF+k+
  Brast09G131600.1.p 243 REARLMRYREKRKSRRFEKTIRYASRKAYAETRPRVKGRFAKR 285
                         9****************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003361.6E-61761IPR000315B-box-type zinc finger
PROSITE profilePS5011910.2391761IPR000315B-box-type zinc finger
PfamPF006431.9E-52052IPR000315B-box-type zinc finger
CDDcd000211.36E-62061No hitNo description
PROSITE profilePS5011910.28157104IPR000315B-box-type zinc finger
PfamPF006437.1E-659104IPR000315B-box-type zinc finger
CDDcd000214.00E-860104No hitNo description
SMARTSM003361.0E-862104IPR000315B-box-type zinc finger
PfamPF062036.4E-18243285IPR010402CCT domain
PROSITE profilePS5101716.936243285IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010099Biological Processregulation of photomorphogenesis
GO:0010161Biological Processred light signaling pathway
GO:0005634Cellular Componentnucleus
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 342 aa     Download sequence    Send to blast
MEGEEKPAAA GGAYWGVGAR ACDACAVEAA RLFCRADAAF LCAGCDARAH GHGSRHARVW  60
LCEVCEHAPA AVTCKADAAA LCGACDADIH AANPLARRHE RVPVAPFFGA LDDAHKPFVP  120
GAHAPEAAAA GNKNNDDDDD EDDRSNDAEA ASWLLPEPDQ KDGAAFFADS DPYHLDLDFA  180
RSMDDIKAIS AQLNGAQAEL GLAAGNSKLF YSDLSMNHSV TSSEAAVVPE SAPVAVASRG  240
REREARLMRY REKRKSRRFE KTIRYASRKA YAETRPRVKG RFAKRTGNGG GPASADALEE  300
EDEHEGLYSS AAAAVAALLA PGPGHGPELD YAVDGVVPTL V*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast09G131600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1210241e-120AK121024.1 Oryza sativa Japonica Group cDNA clone:J023049O11, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003580070.11e-180zinc finger protein CONSTANS-LIKE 3
TrEMBLI1IZ981e-178I1IZ98_BRADI; Uncharacterized protein
STRINGBRADI5G14600.11e-179(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP21913272
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24790.24e-26CONSTANS-like 3