PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast09G092500.3.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family FAR1
Protein Properties Length: 629aa    MW: 71220.7 Da    PI: 7.0218
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast09G092500.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR159.88.7e-1945140191
                FAR1   1 kfYneYAkevGFsvrkskskks.krngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkek...dgkwevtkleleHn 86 
                         +fY+ +Ak++GFs+r+++++ +    +  t+r fvC + g++  +  +   k +r+r+++r+gC+a l++ ++      +w+vt ++++Hn
  Brast09G092500.3.p  45 EFYSGFAKQCGFSIRRHRTEGKdGVGKGLTRRYFVCHRAGNTPAKPFSdGAKPQRNRKSSRCGCQAYLRIGRDAgagAPEWRVTGFSNQHN 135
                         6**************9998877356667999*********998887664677889*****************99877789*********** PP

                FAR1  87 Helap 91 
                         Hel p
  Brast09G092500.3.p 136 HELLP 140
                         **975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031012.2E-1645140IPR004330FAR1 DNA binding domain
PfamPF105511.5E-12232319IPR018289MULE transposase domain
PROSITE profilePS5096610.249507545IPR007527Zinc finger, SWIM-type
SMARTSM005755.9E-6520547IPR006564Zinc finger, PMZ-type
PfamPF044342.7E-6521544IPR007527Zinc finger, SWIM-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 629 aa     Download sequence    Send to blast
MEGTSSGEEE EDYPNQKRLS METAGADDSA PYIGQRFLTH DAAYEFYSGF AKQCGFSIRR  60
HRTEGKDGVG KGLTRRYFVC HRAGNTPAKP FSDGAKPQRN RKSSRCGCQA YLRIGRDAGA  120
GAPEWRVTGF SNQHNHELLP LDQQMMRIME LEKFVEPGSL PFTEKDVRNL ILSFRRFDQE  180
EESVDLLRMC RNVKEKDPNF VYDFTKANDR LENIAWSYAS SIQSYEIFGD AVIFDTNHRL  240
TGLDMALGIW FGMNNYGMPC FFGCTLLREE SVHSFAWALQ AFLNFVNRKA PLTILTDQNV  300
YLKEAVEKEL PNTKHALSIL LIAARFPSWF SAVLGKRYND LKNEIYRLYS MENTIDFDLG  360
WSDMVNCYGL HGDRHIATLF ASRKHWALPY LRGYFLAGLT AIPEVSNSIN AFIQQFMRAQ  420
TCISHFVEQV AIVVDDKDQA VGQQIMQENP QTISLKTAAP MEAHAAAVLT PYAFSKLQDE  480
LVAAAHYASF HLEGNAFLVR HRTKTEGRSS VTWNQSEQLV SCSCQLFESS GILCRHALLV  540
LTTLNYLQIP DHYLPVRWRR TQSPPPNSLN GIPDHGGASE RVKALQSMVS ALVSEAAKSD  600
ERIDLATQEI SDLLSRIRQQ PVFRECFR*
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription activator involved in regulating light control of development.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast09G092500.3.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024311980.10.0protein FAR1-RELATED SEQUENCE 11 isoform X2
SwissprotQ9SY660.0FRS11_ARATH; Protein FAR1-RELATED SEQUENCE 11
TrEMBLA0A2K2CGM70.0A0A2K2CGM7_BRADI; Uncharacterized protein
STRINGBRADI5G11330.10.0(Brachypodium distachyon)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10240.10.0FAR1-related sequence 11
Publications ? help Back to Top
  1. Joly-Lopez Z, et al.
    Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements.
    Front Plant Sci, 2017. 8: p. 2027
    [PMID:29250089]