PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast09G085400.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family ZF-HD
Protein Properties Length: 283aa    MW: 29255.8 Da    PI: 7.8401
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast09G085400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer84.51.2e-262167556
         ZF-HD_dimer  5 rYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRre 56
                        +YkeC++NhAa++Gg+a+DGCgE+m++     ++++l CaACgCHR+FHRr 
  Brast09G085400.1.p 21 KYKECMRNHAAAMGGQAFDGCGEYMSA-----SPDSLSCAACGCHRSFHRRA 67
                        8*************************9.....799***************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
TIGRFAMsTIGR015661.0E-232167IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047701.8E-212167IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257743.0E-192166IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152325.6962267IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466894.85E-17149217IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.4E-26154218IPR009057Homeodomain-like
TIGRFAMsTIGR015651.4E-25159215IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 283 aa     Download sequence    Send to blast
MMDQLSLVPY EGGSGAAGAG KYKECMRNHA AAMGGQAFDG CGEYMSASPD SLSCAACGCH  60
RSFHRRAAGS LTGSPVFFRP PPLPHPHHGV LQGFLASAHP PPPPQLALPY HAVPTAAWHH  120
GLGLDPAHTA RAGSETPPRG EDCSPVSGPG GGMCGSFGRK RVRTKFTPEQ KERMREFAER  180
QGWRINRDDG GALDRFCLEI GVKRNVLKVW MHNHKTHLAS PTFRSAAAAA AIAAGINPVA  240
GAGAGAGIGI TGTGDGDGDD EDTDDSPPRA AVSSPSPSPV SV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A1e-201602151873ZF-HD homeobox family protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast09G085400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3731512e-71AK373151.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3022I13.
GenBankAK3744862e-71AK374486.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3066K06.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003579781.11e-122zinc-finger homeodomain protein 8
SwissprotQ7X7N34e-78ZHD8_ORYSJ; Zinc-finger homeodomain protein 8
TrEMBLI1IXW01e-120I1IXW0_BRADI; Uncharacterized protein
STRINGBRADI5G10470.11e-121(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP136492225
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69600.14e-40zinc finger homeodomain 1