PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast09G048200.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family MYB_related
Protein Properties Length: 659aa    MW: 74244.6 Da    PI: 8.811
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast09G048200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding21.65.2e-07601643343
                         SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHH CS
     Myb_DNA-binding   3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksr 43 
                         +W++   + lv+a k ++++   +W+++a+ ++ g+t  qck +
  Brast09G048200.1.p 601 AWSEAQVLALVQALKAFPKDanqRWERVAAAVP-GKTVVQCKKK 643
                         8********************************.********76 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF465655.1E-2092176IPR001623DnaJ domain
Gene3DG3DSA:1.10.287.1108.0E-2194199IPR001623DnaJ domain
SMARTSM002713.6E-1597172IPR001623DnaJ domain
CDDcd062573.35E-1398169IPR001623DnaJ domain
PROSITE profilePS5007618.15198180IPR001623DnaJ domain
PfamPF002266.3E-1898177IPR001623DnaJ domain
PRINTSPR006251.2E-8103121IPR001623DnaJ domain
PRINTSPR006251.2E-8121136IPR001623DnaJ domain
PRINTSPR006251.2E-8152172IPR001623DnaJ domain
PROSITE patternPS006360157176IPR018253DnaJ domain, conserved site
PROSITE profilePS500905.901464519IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.601.6E-4466511IPR009057Homeodomain-like
SuperFamilySSF466894.56E-7466512IPR009057Homeodomain-like
SMARTSM007177.2E-5468521IPR001005SANT/Myb domain
CDDcd001675.30E-4471511No hitNo description
SMARTSM007171.4E-5598650IPR001005SANT/Myb domain
SuperFamilySSF466891.12E-7599643IPR009057Homeodomain-like
PROSITE profilePS500906.075599643IPR017877Myb-like domain
CDDcd001674.74E-5601643No hitNo description
PfamPF002491.6E-5601643IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.3E-4601643IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 659 aa     Download sequence    Send to blast
MGSKRSCLLI TYSPEITDGV PFYVSSNCLP VKASKYEPAG HSFHAVALKL RGLDEKEDAE  60
TDDRSVSSDD KSQDFSAASD TFSSKGKKKS ASGSQQQDHY ALLGLGNLRF LATEDQIRKS  120
YRDMALKHHP DKQAALLLHE VTEEAKQAKK DEIESHFKAI QEAYEVLMDP TKRRIFDSTD  180
EFDDDIPTDC APQDFFKVFG PAFMRNGRWS VTQPIPSLGD DATPVADVDQ FYNFWYNFKS  240
WREFPHEDEY DLEQAESREH KRWMERQNSK IQEKAKKVEY ARVRNLVDNA FKKDPRIQRR  300
KEEEKAEKQR RREAKYMAKR LQEEEAARAA EEERKRKEEE AKKAAEAALN QKKLREKEKK  360
LLRKEKSRLR ALMAPVVADN QFNLSQDDVE TACTSLDIEQ LKKLCDNMED KDTTEKARLL  420
RGALSKESSP NTSKEKIQAN GVEGSTPKPM PMGEKVPQGN ALSGYEKKER PWGKEEVEML  480
RKATQKYPKG TSRRWEVVSE FIGTGRSVEE ILKATKTVLL QKPDSAKAFD SFLEKRKPAP  540
SIVSPLSTRD ETVVLPTVGA GTEPSKAAAA QPAAASSQTA NEKTGADPIP EEAPSVTDQD  600
AWSEAQVLAL VQALKAFPKD ANQRWERVAA AVPGKTVVQC KKKVAAMRSN FRTKKGAE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5dje_A1e-1919429820124Zuotin
5dje_B1e-1919429820124Zuotin
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast09G048200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010239784.10.0dnaJ homolog subfamily C member 2
TrEMBLI1IWY00.0I1IWY0_BRADI; Uncharacterized protein
STRINGBRADI5G07300.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP81193440
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G11450.10.0DnaJ domain ;Myb-like DNA-binding domain