PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast08G227000.2.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family AP2
Protein Properties Length: 499aa    MW: 54109.2 Da    PI: 6.4027
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast08G227000.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.46.3e-17167216155
                 AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                         s+y+GV++++++grW+++I+d      + k+++lg f+ta  Aa+a+++a+ k++g
  Brast08G227000.2.p 167 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 216
                         78*******************......55************************997 PP
2AP240.37.9e-13259309155
                 AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                         s+y+GV+ +k  grW+A+   +     +k+++lg f+ + eAa+a+++a+ k +g
  Brast08G227000.2.p 259 SKYRGVTLHK-CGRWEARMGQF--L-GKKYIYLGLFDNEVEAARAYDKAAIKCNG 309
                         89********.7******5553..2.26**********99**********99776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541716.15E-16167225IPR016177DNA-binding domain
PfamPF008475.8E-9167216IPR001471AP2/ERF domain
PROSITE profilePS5103217.794168224IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.6E-17168225IPR001471AP2/ERF domain
SMARTSM003803.3E-32168230IPR001471AP2/ERF domain
CDDcd000186.22E-11168226No hitNo description
SuperFamilySSF541711.18E-16259318IPR016177DNA-binding domain
CDDcd000183.29E-24259319No hitNo description
PfamPF008475.9E-8259309IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.3E-15260317IPR001471AP2/ERF domain
SMARTSM003801.8E-31260323IPR001471AP2/ERF domain
PROSITE profilePS5103215.277260317IPR001471AP2/ERF domain
PRINTSPR003675.4E-6261272IPR001471AP2/ERF domain
PRINTSPR003675.4E-6299319IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 499 aa     Download sequence    Send to blast
MELDLNVEEK LPSAAMAAAA AAARSDSGTS ESSVLNGETS AAAEEGSSST PPPPMRAALE  60
FSILRASASA EGENDVGDDE EEEEATPSPP WPPQELVTRE LFPSAMVPPP QQQHWAELGF  120
FRPPPPQPAD VRLLQHAHAP PPAPPPPPAA QPPPAKKSRR GPRSRSSQYR GVTFYRRTGR  180
WESHIWDCGK QVYLGGFDTA HAAARAYDRA AIKFRGVDAD INFNLSDYED DMKQMKGLSK  240
EEFVHVLRRQ STGFSRGSSK YRGVTLHKCG RWEARMGQFL GKKYIYLGLF DNEVEAARAY  300
DKAAIKCNGR EAVTNFEPST YEGELLTEVA SEGADVDLNL SISQPASQSP RTDKNSLGLQ  360
LDHGSLQGSE VKRAKIDAPS ELAMLPHRQY PLLAEHPPIW PGQSYPMFLN NEGAAREQHS  420
RRPEVGIGGV PSWAWRVSHP PPTLPLPLFS SSSSSSSPAA ASSGFYNTAT TTAAPAATPA  480
SFRFDPMAPS SSSSYHHR*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor (By similarity). Involved in spikelet transition. Regulator of starch biosynthesis especially during seed development (e.g. endosperm starch granules); represses the expression of type I starch synthesis genes. Prevents lemma and palea elongation as well as grain growth (By similarity). {ECO:0000250|UniProtKB:P47927, ECO:0000250|UniProtKB:Q2TQ34}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00615PBMTransfer from AT2G28550Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast08G227000.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010231785.10.0floral homeotic protein APETALA 2 isoform X1
SwissprotB8AXC30.0AP21_ORYSI; APETALA2-like protein 1
TrEMBLI1HMH90.0I1HMH9_BRADI; Uncharacterized protein
STRINGBRADI2G37800.10.0(Brachypodium distachyon)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28550.32e-96related to AP2.7