PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Brast08G181200.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | WRKY | ||||||||
Protein Properties | Length: 163aa MW: 18159.3 Da PI: 8.7588 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 95.9 | 2.8e-30 | 91 | 148 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 +Dg++WrKYG+K vk+s++pr+YYrC+ ++C vkk+ver+++dp++v++tY g Hnh Brast08G181200.1.p 91 EDGFKWRKYGKKAVKDSPNPRNYYRCSAERCGVKKRVERDRDDPRFVVTTYDGVHNHA 148 8********************************************************6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 4.8E-30 | 84 | 150 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 29.7 | 85 | 150 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 3.14E-26 | 86 | 150 | IPR003657 | WRKY domain |
SMART | SM00774 | 3.7E-33 | 90 | 149 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.7E-23 | 91 | 147 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 163 aa Download sequence Send to blast |
MAASLGLIPE ADLFSSSPFQ ADADFTSQLH DYQHRYPSDL EYSAAPPVFF FPGAGKEEEK 60 MKAAARKEKA RAGGGGRIGF RTRSEEVEIL EDGFKWRKYG KKAVKDSPNP RNYYRCSAER 120 CGVKKRVERD RDDPRFVVTT YDGVHNHASP VSAAAALHYY CS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 8e-25 | 73 | 150 | 1 | 77 | Probable WRKY transcription factor 4 |
2lex_A | 8e-25 | 73 | 150 | 1 | 77 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Brast08G181200.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK357196 | 2e-76 | AK357196.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1048A03. | |||
GenBank | AK367065 | 2e-76 | AK367065.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2050M16. | |||
GenBank | DQ840416 | 2e-76 | DQ840416.1 Hordeum vulgare subsp. vulgare WRKY transcription factor 17 (WRKY17) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010231637.1 | 1e-85 | probable WRKY transcription factor 50 | ||||
TrEMBL | I1HL63 | 3e-84 | I1HL63_BRADI; Uncharacterized protein | ||||
STRING | BRADI2G33540.1 | 5e-85 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP441 | 37 | 206 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G26170.1 | 1e-36 | WRKY DNA-binding protein 50 |
Link Out ? help Back to Top | |
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Phytozome | Brast08G181200.1.p |