PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast08G157100.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family WRKY
Protein Properties Length: 390aa    MW: 41755.8 Da    PI: 7.6555
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast08G157100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY83.61.9e-26211270258
                         --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS CS
                WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnh 58 
                         dDgy+WrKYGqK++ gs++prsYYrCt++   gC++kkkv+r +edp + e+tY g+H +
  Brast08G157100.1.p 211 DDGYTWRKYGQKDILGSRYPRSYYRCTHKnyyGCEAKKKVQRLDEDPFTYEVTYCGNHSC 270
                         8***************************99999*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.9E-26203270IPR003657WRKY domain
SuperFamilySSF1182904.32E-24207270IPR003657WRKY domain
SMARTSM007747.2E-36210272IPR003657WRKY domain
PROSITE profilePS5081121.609211269IPR003657WRKY domain
PfamPF031062.4E-24211270IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 390 aa     Download sequence    Send to blast
MHVLAPAYGA GPPLALVLSY LAGHRESKKE AASSNIVHGS NNVVILVGDK MDEALSQISE  60
AFRLAGELMS ELPATQNDPA YLADRCHGIA QAYNTAVRML QPYGGDVAGG PLDFLLLRSG  120
EEAAAGRSQF LGEPPAAQQL QQDYAFHVPA ADVLRGARAV AGGPWRRLAS PSRSPPPVQP  180
RQGSRRRRES GQRQTLMVPA QRTGNTELPP DDGYTWRKYG QKDILGSRYP RSYYRCTHKN  240
YYGCEAKKKV QRLDEDPFTY EVTYCGNHSC LTSTTPLLTL PPATAASTTT NSPTAASGSR  300
LVPDLVMAHA EQPHSAAALS TSIHLGMNWM PGSIQGTGEG SSGAQMNVSA AGRDTDYPVL  360
DLADVMFNSG SSGASSMDGI FPFHHRRDT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A2e-20211270968OsWRKY45
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00304DAPTransfer from AT2G40740Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast08G157100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2878173e-90AK287817.1 Oryza sativa Japonica Group cDNA, clone: J065181J09, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003566384.30.0WRKY transcription factor 55
TrEMBLA0A0Q3ILV30.0A0A0Q3ILV3_BRADI; Uncharacterized protein
STRINGBRADI2G30800.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP97963344
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40740.17e-37WRKY DNA-binding protein 55