PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast08G155300.3.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family ERF
Protein Properties Length: 333aa    MW: 36900.1 Da    PI: 4.6402
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast08G155300.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.82.6e-1880129255
                 AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                          ++GVr++  +g+WvAeIr+p   + r  r +lg+f tae Aa a+++a+++++g
  Brast08G155300.3.p  80 EFRGVRQRT-WGKWVAEIREP---N-RvSRLWLGTFPTAETAAHAYDEAARAMYG 129
                         59****999.**********8...2.58************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000184.28E-2979139No hitNo description
SMARTSM003805.3E-3680143IPR001471AP2/ERF domain
PfamPF008472.8E-1280129IPR001471AP2/ERF domain
PROSITE profilePS5103221.9780137IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.2E-3180137IPR001471AP2/ERF domain
PRINTSPR003671.3E-98192IPR001471AP2/ERF domain
SuperFamilySSF541712.03E-2081138IPR016177DNA-binding domain
PRINTSPR003671.3E-9103119IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009414Biological Processresponse to water deprivation
GO:0009651Biological Processresponse to salt stress
GO:0009737Biological Processresponse to abscisic acid
GO:0010286Biological Processheat acclimation
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 333 aa     Download sequence    Send to blast
MWSRGKYPES CFRRINRKKR PRRSRDGPNS VYETIRRWKE VNQQLEHDPE GSKRARKPPA  60
KGSKKGCMQG KGGPENMRCE FRGVRQRTWG KWVAEIREPN RVSRLWLGTF PTAETAAHAY  120
DEAARAMYGP LARTNFPIQD VPTPAVDIPA VVQRLLPGGS TSCESTMTSN NSDIVASSRV  180
LEISSSLRQS DVGCGHDQSS NQYSSPQAGS SIARSTADDD LFEPLESIAN LPDGEDDDGF  240
DIEELLRMME ADPVEAAEPM VEGSWTGFQD VGGNTVVEFG QQEPLYLDDF DPSMLDGMLQ  300
LAGPLPTCIS EDRVMYNPGL RDAELSEFFE GL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A1e-1481139362ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3' of the cis-acting dehydration-responsive element (DRE). Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription. Involved in drought and heat-shock stress tolerance. {ECO:0000269|PubMed:20049613}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00302DAPTransfer from AT2G40340Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast08G155300.3.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By heat shock, high-salt and drought stresses. {ECO:0000269|PubMed:20049613}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJF7545831e-142JF754583.1 Leymus chinensis dehydration-responsive element binding protein 2B (DREB2) mRNA, complete sequence, alternatively spliced.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003568656.10.0dehydration-responsive element-binding protein 2B isoform X1
SwissprotQ5W6R42e-82DRE2B_ORYSJ; Dehydration-responsive element-binding protein 2B
TrEMBLI1HKG20.0I1HKG2_BRADI; Uncharacterized protein
STRINGBRADI2G29960.10.0(Brachypodium distachyon)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40340.17e-35ERF family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Cheng CH, et al.
    A fine physical map of the rice chromosome 5.
    Mol. Genet. Genomics, 2005. 274(4): p. 337-45
    [PMID:16261349]