PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast08G155300.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family ERF
Protein Properties Length: 384aa    MW: 41678.4 Da    PI: 4.5048
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast08G155300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.53.2e-18131180255
                 AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                          ++GVr++  +g+WvAeIr+p   + r  r +lg+f tae Aa a+++a+++++g
  Brast08G155300.1.p 131 EFRGVRQRT-WGKWVAEIREP---N-RvSRLWLGTFPTAETAAHAYDEAARAMYG 180
                         59****999.**********8...2.58************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.50E-29130190No hitNo description
PfamPF008473.5E-12131180IPR001471AP2/ERF domain
PROSITE profilePS5103221.97131188IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.5E-31131188IPR001471AP2/ERF domain
SMARTSM003805.3E-36131194IPR001471AP2/ERF domain
SuperFamilySSF541712.62E-20132189IPR016177DNA-binding domain
PRINTSPR003671.7E-9132143IPR001471AP2/ERF domain
PRINTSPR003671.7E-9154170IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009414Biological Processresponse to water deprivation
GO:0009651Biological Processresponse to salt stress
GO:0009737Biological Processresponse to abscisic acid
GO:0010286Biological Processheat acclimation
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 384 aa     Download sequence    Send to blast
MTVDQRSAAA APLEIPALQP GRTCGAEANT RSHVSVESIG SCTLPCNECA LSAQQTPKGD  60
ALVASILRKK RPRRSRDGPN SVYETIRRWK EVNQQLEHDP EGSKRARKPP AKGSKKGCMQ  120
GKGGPENMRC EFRGVRQRTW GKWVAEIREP NRVSRLWLGT FPTAETAAHA YDEAARAMYG  180
PLARTNFPIQ DVPTPAVDIP AVVQRLLPGG STSCESTMTS NNSDIVASSR VLEISSSLRQ  240
SDVGCGHDQS SNQYSSPQAG SSIARSTADD DLFEPLESIA NLPDGEDDDG FDIEELLRMM  300
EADPVEAAEP MVEGSWTGFQ DVGGNTVVEF GQQEPLYLDD FDPSMLDGML QLAGPLPTCI  360
SEDRVMYNPG LRDAELSEFF EGL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A5e-15132190362ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3' of the cis-acting dehydration-responsive element (DRE). Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription. Involved in drought and heat-shock stress tolerance. {ECO:0000269|PubMed:20049613}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00302DAPTransfer from AT2G40340Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast08G155300.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By heat shock, high-salt and drought stresses. {ECO:0000269|PubMed:20049613}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJF7545841e-164JF754584.1 Leymus chinensis dehydration-responsive element binding protein 2C (DREB2) mRNA, complete cds, alternatively spliced.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003568656.10.0dehydration-responsive element-binding protein 2B isoform X1
SwissprotQ5W6R42e-83DRE2B_ORYSJ; Dehydration-responsive element-binding protein 2B
TrEMBLI1HKG20.0I1HKG2_BRADI; Uncharacterized protein
STRINGBRADI2G29960.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP115153037
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40340.13e-36ERF family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Cheng CH, et al.
    A fine physical map of the rice chromosome 5.
    Mol. Genet. Genomics, 2005. 274(4): p. 337-45
    [PMID:16261349]