PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast08G084500.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family WRKY
Protein Properties Length: 297aa    MW: 32529.5 Da    PI: 7.1975
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast08G084500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY63.43.9e-20138199259
                         --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-S.SSTTEEEEEEES--SS- CS
                WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversa.edpkvveitYegeHnhe 59 
                         +Dg++WrKYG K++ ++ fpr YYrC ++   +Cp+kk v++++ +d+ ++ +t  ++H+++
  Brast08G084500.1.p 138 NDGFHWRKYGEKKILNAAFPRLYYRCGYSdehKCPAKKYVQQQDnDDTPLFMVTLINDHTCD 199
                         7**************************998899*******98761567899********996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.7E-21126199IPR003657WRKY domain
SuperFamilySSF1182901.7E-20131199IPR003657WRKY domain
PROSITE profilePS5081114.929132183IPR003657WRKY domain
SMARTSM007746.4E-31137200IPR003657WRKY domain
PfamPF031062.0E-21138199IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    Send to blast
MATRRPKSEM SPLPELTPSD QRVDAVIREL RKGAQLAEFL RQQVELIPEH GRRDAALANV  60
SDISTALASS LSVLQSEREQ LYSPSSSSSS DAGVAAHPAP AFGARNGPVV RTRKAKHRRG  120
SHGQELPIKE IVTETPENDG FHWRKYGEKK ILNAAFPRLY YRCGYSDEHK CPAKKYVQQQ  180
DNDDTPLFMV TLINDHTCDT LFPAEQSAGS SSNSSTNLQV LDFTKASISS PTMAAAAAAV  240
SRLKKEEVVA GMSVTTPGYT YDELSSSSPS LMSPMQWEME MEMKSIFRRQ DASSGS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast08G084500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010233189.21e-163WRKY transcription factor 55
TrEMBLI1HIE71e-161I1HIE7_BRADI; Uncharacterized protein
STRINGBRADI2G22230.11e-162(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP99932944
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40740.11e-16WRKY DNA-binding protein 55