PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Brast08G070700.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | bHLH | ||||||||
Protein Properties | Length: 311aa MW: 32772.7 Da PI: 6.2407 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 13.3 | 0.00016 | 197 | 234 | 12 | 54 |
HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 R +++ +++ L++l+ + +K + a++L +A+ YIk L Brast08G070700.1.p 197 RKEKLGDRITALQQLVSPF-----GKTDTASVLHEAIGYIKFL 234 677888999*******998.....8****************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 11.153 | 185 | 234 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 7.57E-5 | 195 | 239 | No hit | No description |
SuperFamily | SSF47459 | 1.13E-10 | 195 | 245 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 8.5E-8 | 195 | 243 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 311 aa Download sequence Send to blast |
MAEEWWSAAR TGGDDAPAAT VSTTSRTSEA SQPCFPVDAA ASSSASFVLP DPDMDWTQAF 60 MDGKVAESEH PTSFNALLGL QGDASRQFLL DQAALLQQPG VSQQYADSPE SLTPFCSQQQ 120 QQQQQLPGGF FVSSSSGLFG SSPVPPPGHI KSKPAAVQVQ DACSSSATKR AAAAGSPVAS 180 KKPRIDMPSP LPAFKVRKEK LGDRITALQQ LVSPFGKTDT ASVLHEAIGY IKFLHDQVAS 240 LSSPYLTSCG RALQDQHQLQ VGSIKVDGKA KEDLRSRGLC LVPVASTYTV AGEAASEFWH 300 PTFGVGGTFR * |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Brast08G070700.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CT837834 | 2e-75 | CT837834.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA129D11, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003566069.1 | 1e-158 | transcription factor bHLH123 | ||||
TrEMBL | A0A0Q3QWB2 | 1e-157 | A0A0Q3QWB2_BRADI; Uncharacterized protein | ||||
STRING | BRADI2G20720.1 | 1e-127 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2970 | 34 | 64 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G61660.1 | 1e-46 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Brast08G070700.1.p |