PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast08G060900.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family ARF
Protein Properties Length: 678aa    MW: 73536.5 Da    PI: 7.9792
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast08G060900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B378.37.9e-25135236199
                         EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS
                  B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 
                         f+k+lt sd++++g +++p++ ae++      +++   s++l+ +d++g +W++++iyr++++r++lt+GW++Fv+ ++L +gD v+F   
  Brast08G060900.1.p 135 FCKTLTASDTSTHGGFSVPRRAAEDCfppldyKQVR-PSQELIAKDLHGTRWRFRHIYRGQPRRHLLTTGWSSFVNKKKLVSGDAVLFL-- 222
                         99****************************974443.4579************************************************.. PP

                         SSSEE..EEEEE-S CS
                  B3  86 grsefelvvkvfrk 99 
                         + s++el+++++r+
  Brast08G060900.1.p 223 RGSDGELRLGIRRA 236
                         449999*****996 PP
2Auxin_resp111.96.1e-37261341182
          Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsL 82 
                         +a++++++s+F+v++nPr+++seF+v+++k++k+l++++s+GmRfk+++e+ed++er+ sG+++gvs++dp+rWp+SkWr+L
  Brast08G060900.1.p 261 VASSLRNRSTFHVCFNPRSGASEFIVPYQKFSKSLNHPLSIGMRFKLSYESEDANERS-SGMISGVSEVDPIRWPGSKWRCL 341
                         578899***************************************************9.9*********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019365.23E-44126265IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.105.0E-40131237IPR015300DNA-binding pseudobarrel domain
CDDcd100177.10E-23133235No hitNo description
PROSITE profilePS5086313.183135237IPR003340B3 DNA binding domain
PfamPF023627.7E-23135236IPR003340B3 DNA binding domain
SMARTSM010195.3E-23135237IPR003340B3 DNA binding domain
PfamPF065072.0E-30262341IPR010525Auxin response factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 678 aa     Download sequence    Send to blast
MGIDLNTVEE DGDAASASAE AVCGELWHAC AGPGVALPRR GSALVYLPQG HLASGGGGGG  60
GGEVAGAAPP VPPHVACRVL DVELCADAAT DEVYARLALV AVCEMFRQNL SGTAWGEEDM  120
ECGSGEKKPR MPHMFCKTLT ASDTSTHGGF SVPRRAAEDC FPPLDYKQVR PSQELIAKDL  180
HGTRWRFRHI YRGQPRRHLL TTGWSSFVNK KKLVSGDAVL FLRGSDGELR LGIRRAVQLR  240
NEDLFKAVNS SDSRQRTLSA VASSLRNRST FHVCFNPRSG ASEFIVPYQK FSKSLNHPLS  300
IGMRFKLSYE SEDANERSSG MISGVSEVDP IRWPGSKWRC LLVRWDGNTD CNHQHRVSPW  360
EIERVGGMNS VTHSLSASNS KRTKLSFPES NLDAPVIDGN GYPDSMETKK FHRVLQGQES  420
MGSRTHGVAC SQSPDVVKIR TSDNRRFSNV REQASEFIYQ HLGFGESVGF PEVLQGQEMS  480
QAVPFFQGTN FDTCATNGRV GSFSHVRQSA APTGLPAEAQ GYALPQFALS SAAKVSSPSS  540
VLMFNQATVP QLELEGRTHH HGAYLSQCSP LEMASKTDAW PRVQRPVPRE TGGHRFDIGR  600
ALTPANSGLA TRDSGRSNCR LFGFSLTEKI LGAGEDVKGG NSNEEADRAD PRLLELFGHR  660
HPSPSALHAL VAAPLGM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldy_A8e-96123759362Auxin response factor 1
4ldy_B8e-96123759362Auxin response factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast08G060900.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by auxin under light condition. {ECO:0000269|PubMed:17408882}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003568111.10.0auxin response factor 14 isoform X2
SwissprotQ0DGS10.0ARFN_ORYSJ; Auxin response factor 14
TrEMBLA0A0Q3G4H50.0A0A0Q3G4H5_BRADI; Auxin response factor
STRINGBRADI2G19867.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP51132756
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33860.11e-147ARF family protein
Publications ? help Back to Top
  1. Cheng CH, et al.
    A fine physical map of the rice chromosome 5.
    Mol. Genet. Genomics, 2005. 274(4): p. 337-45
    [PMID:16261349]