PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast08G026500.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family Trihelix
Protein Properties Length: 352aa    MW: 37584 Da    PI: 10.528
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast08G026500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix43.39.4e-1442128186
            trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.......rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdq 84 
                         +W++ e+ aL++a  ++  +l+rg+l++++W+ev++++       ++r   r+ +qCk++ + l+k+yk+++ ++        s +++fd+
  Brast08G026500.1.p  42 CWSEGETAALVDAWGSRYVELNRGNLRQKQWQEVANAVnsrrgaaARRRPPRTDVQCKNRVDTLKKKYKAERVRSAP------SAWSFFDE 126
                         7******************************************99999999*******************9998886......57****** PP

            trihelix  85 le 86 
                         l+
  Brast08G026500.1.p 127 LD 128
                         98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138374.0E-2640130No hitNo description
Gene3DG3DSA:1.10.10.605.8E-441112IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 352 aa     Download sequence    Send to blast
MEVREMAAAA AAAAAGGGGG GGGGGFGRLP PPNPNLPYRE DCWSEGETAA LVDAWGSRYV  60
ELNRGNLRQK QWQEVANAVN SRRGAAARRR PPRTDVQCKN RVDTLKKKYK AERVRSAPSA  120
WSFFDELDRL VGPTLNGAAS KRPSPALAPH LALPVHPSSA AARKYPSPSS SPSPPPPMAL  180
PLPNYRRGAQ LPAAAFIQQE AAAAAAAAVS DSEDSGDNNN HHHNNLQRSP SRSVSSARSG  240
GSNKRRFRRE TGGDGDSGVS ELARAIEAFA EMYERVESAK QKHSLEMERE RIEFLKQLEV  300
KRMENFVDAH VKLARVKRSK SSGAAASNGT GGVELISSVA ALPFLSNSNY L*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast08G026500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014755186.11e-149trihelix transcription factor ASIL2
RefseqXP_014755187.11e-149trihelix transcription factor ASIL2
TrEMBLA0A0Q3MKS51e-147A0A0Q3MKS5_BRADI; Uncharacterized protein
STRINGBRADI2G16780.11e-144(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20653279
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G14180.14e-29sequence-specific DNA binding transcription factors