PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast07G228900.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family ARR-B
Protein Properties Length: 250aa    MW: 28431.6 Da    PI: 8.8792
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast07G228900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like605.1e-19199248151
             G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQ 51 
                         kpr+ W+ eLH +F++av+++ G++kA Pk+i ++m+v+ +++e v SHLQ
  Brast07G228900.1.p 199 KPRVSWSVELHGQFLDAVNKI-GIDKAGPKKICDMMNVDHVSRESVGSHLQ 248
                         79*******************.***************************** PP
2Response_reg95.81e-31281361109
                         EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHH CS
        Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalea 89 
                         v+ vdD+++ +++l+ +l+k +y +v+ ++d+e al++l+ek+  +Dl+++D+ mp+mdG+ell++i  e  +lp+i+++a+++ e++ + 
  Brast07G228900.1.p  28 VMAVDDDRICLMILEAILQKYKY-HVTKVRDAETALKILREKKgwYDLVITDLHMPEMDGFELLRQIGLEM-DLPVIMLSANDDTETVMKG 116
                         799********************.***************999999**********************6654.8****************** PP

                         HHTTESEEEESS--HHHHHH CS
        Response_reg  90 lkaGakdflsKpfdpeelvk 109
                         +++Ga d+l+Kp+++e+l +
  Brast07G228900.1.p 117 IRYGACDYLVKPIQEEQLKH 136
                         *****************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF521723.42E-3924152IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23009.7E-4524168No hitNo description
SMARTSM004482.3E-3526138IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011045.61627142IPR001789Signal transduction response regulator, receiver domain
PfamPF000724.9E-2828136IPR001789Signal transduction response regulator, receiver domain
CDDcd001561.61E-3231142No hitNo description
PROSITE profilePS5129410.805196249IPR017930Myb domain
SuperFamilySSF466893.05E-11197248IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.1E-18197248IPR009057Homeodomain-like
TIGRFAMsTIGR015571.0E-16199249IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 250 aa     Download sequence    Send to blast
MASLQLEKTP AKEAASGASQ KWPEGMRVMA VDDDRICLMI LEAILQKYKY HVTKVRDAET  60
ALKILREKKG WYDLVITDLH MPEMDGFELL RQIGLEMDLP VIMLSANDDT ETVMKGIRYG  120
ACDYLVKPIQ EEQLKHIWQH VFRRRPEARN HNVADHRVEG RIIAEGEQGA RSTCRKNSRN  180
KKNDGRDSNE SKQNSSKKKP RVSWSVELHG QFLDAVNKIG IDKAGPKKIC DMMNVDHVSR  240
ESVGSHLQV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A2e-16195248154ARR10-B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}.
UniProtTranscriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast07G228900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002453411.11e-84two-component response regulator ORR24
SwissprotA2X1N28e-82ORR24_ORYSI; Two-component response regulator ORR24
SwissprotQ6H8058e-82ORR24_ORYSJ; Two-component response regulator ORR24
TrEMBLA0A0Q3H1J23e-96A0A0Q3H1J2_BRADI; Uncharacterized protein
STRINGSb04g005580.15e-84(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP81473447
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31920.19e-70response regulator 10
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]