PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast07G214600.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family GRAS
Protein Properties Length: 465aa    MW: 50740.9 Da    PI: 7.4365
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast07G214600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS367.22.2e-112544321373
                GRAS   1 lvelLlecAeavssgdlelaqalLarlsel...aspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevs 88 
                         lv+ L++cA a+++gd ++a++ L + +++     p+ + + R++ +f+ ALa+rl++ ++   ++ +ps+ s++   ++   ++ f+++ 
  Brast07G214600.1.p  54 LVHILVTCAAAIQAGDYAAATTNLIEARTIlvnTIPNSSGIGRVTNHFATALAHRLFSGSP--NSSPSPSPFSPSANNHACERYRQFYDMV 142
                         689*********************9999887656678899******************444..44567777777778888889999***** PP

                GRAS  89 PilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefn 179
                         P lkf+h+taNqaIlea++g++rvHiiD+ i+ GlQW++L+qa++  p+gpps+RiTgvg+ ++gs++el+e+g  L++ A+ l+vpf+f+
  Brast07G214600.1.p 143 PHLKFAHFTANQAILEAFQGHDRVHIIDLAIMRGLQWLSLIQAFSVSPGGPPSIRITGVGPTHTGSRDELQEVGLLLTEHARILKVPFSFH 233
                         *************************************************************9999************************** PP

                GRAS 180 vlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsles....erdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysa 266
                         +++ ++le l+++++++ +gEa+aVn++ qlh+ll ++   +s    ++d+vL  +  ++Pkv++vveqeadhn+++++erf++al yy a
  Brast07G214600.1.p 234 IVTGDSLEGLKPWMFHLVHGEAIAVNSICQLHSLLVDPDIASSslppPIDTVLGWISAMQPKVFTVVEQEADHNKPTLVERFTNALFYYGA 324
                         **********************************966544444566699****************************************** PP

                GRAS 267 lfdsleaklpres..eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveees 355
                         +fds+ea + r     + +  E++ l+rei n+v++eg++r+erhetl +Wr+rl++aG+ +vpls  +   a++llr +++ gy+v e+ 
  Brast07G214600.1.p 325 MFDSMEAVATRSRasAAGRGAEAH-LQREIFNIVCNEGSSRVERHETLPSWRARLRRAGLAQVPLSPINLRHASMLLRIFSGAGYHVMERG 414
                         *****8876655552555556666.****************************************************************** PP

                GRAS 356 gslvlgWkdrpLvsvSaW 373
                         + l+l W+++pL+svS+W
  Brast07G214600.1.p 415 DGLMLAWHNKPLFSVSVW 432
                         ****************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098553.96728413IPR005202Transcription factor GRAS
PfamPF035147.6E-11054432IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 465 aa     Download sequence    Send to blast
MGPAASSPLT GTVPSPSTQA AVMTNTNNRV DPSTYASHRL QPAMSLHERA AIRLVHILVT  60
CAAAIQAGDY AAATTNLIEA RTILVNTIPN SSGIGRVTNH FATALAHRLF SGSPNSSPSP  120
SPFSPSANNH ACERYRQFYD MVPHLKFAHF TANQAILEAF QGHDRVHIID LAIMRGLQWL  180
SLIQAFSVSP GGPPSIRITG VGPTHTGSRD ELQEVGLLLT EHARILKVPF SFHIVTGDSL  240
EGLKPWMFHL VHGEAIAVNS ICQLHSLLVD PDIASSSLPP PIDTVLGWIS AMQPKVFTVV  300
EQEADHNKPT LVERFTNALF YYGAMFDSME AVATRSRASA AGRGAEAHLQ REIFNIVCNE  360
GSSRVERHET LPSWRARLRR AGLAQVPLSP INLRHASMLL RIFSGAGYHV MERGDGLMLA  420
WHNKPLFSVS VWHIMEEEFE DNKNNIVRQS IGLLATTGEM LSMQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A8e-466143225377Protein SCARECROW
5b3h_D8e-466143225377Protein SCARECROW
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast07G214600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003561023.10.0DELLA protein GAI
TrEMBLA0A0Q3NHV10.0A0A0Q3NHV1_BRADI; Uncharacterized protein (Fragment)
STRINGBRADI1G32070.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP99838138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03450.13e-83RGA-like 2