PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Brast07G180300.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | DBB | ||||||||
Protein Properties | Length: 282aa MW: 29964.6 Da PI: 5.5668 | ||||||||
Description | DBB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 17.3 | 1e-05 | 4 | 44 | 5 | 39 |
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39 C+ ++ ++++ C ++ lC C H+ H++ Brast07G180300.1.p 4 QCDVCGVEPATVLCCADEAALCSACNRRVHRAnklagkHRR 44 7***************************9*76777777775 PP | |||||||
2 | zf-B_box | 23.8 | 9.5e-08 | 61 | 100 | 4 | 37 |
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg......H 37 + C+ ++e + + fC +++ lC+ C + +H+ H Brast07G180300.1.p 61 PLCDVCKERRGIVFCVEDRAILCAGCDEPIHSAndltakH 100 78*****************************655566555 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00336 | 1.1E-7 | 1 | 47 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS50119 | 9.513 | 1 | 47 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 9.17E-5 | 3 | 47 | No hit | No description |
PROSITE profile | PS50119 | 9.115 | 58 | 105 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 5.8E-15 | 58 | 105 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 2.38E-6 | 61 | 105 | No hit | No description |
Pfam | PF00643 | 2.7E-5 | 61 | 101 | IPR000315 | B-box-type zinc finger |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 282 aa Download sequence Send to blast |
MRVQCDVCGV EPATVLCCAD EAALCSACNR RVHRANKLAG KHRRLALQQP SSPTNDAAAG 60 PLCDVCKERR GIVFCVEDRA ILCAGCDEPI HSANDLTAKH SRFLLVGAKL SAAELADHQD 120 HQIPSPDCSS DAHANSSPSP AEDAVLNGAG GGGGTGSSIS DYLTNICPGW RVEDLLLDDA 180 AFASKQKGRD EQVPFLDADL FDVVAAGEKR GGAWAQAPRV PQPAWASLEE VVPAPKQAKQ 240 QQQGHVREWY HSDSDSDVFA VPEISPTPPA KRARPSPFWC L* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Brast07G180300.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK363277 | 1e-123 | AK363277.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2013O17. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003563555.1 | 1e-171 | B-box zinc finger protein 20 | ||||
TrEMBL | I1GWZ6 | 1e-169 | I1GWZ6_BRADI; Uncharacterized protein | ||||
STRING | BRADI1G35030.1 | 1e-170 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP12100 | 24 | 30 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G75540.1 | 1e-44 | salt tolerance homolog2 |
Link Out ? help Back to Top | |
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Phytozome | Brast07G180300.1.p |