PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Brast07G166400.1.p

Organism

Brachypodium stacei

Taxonomic ID

1071399

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

G2-like

Protein Properties

Length: 269aa MW: 29441.2 Da PI: 8.1274

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Brast07G166400.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	102.5	2.7e-32	47	101	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 ++rlrWt eLH rF++av+qLGG+++AtPk il++m+v+gLt++hvkSHLQkYRl Brast07G166400.1.p 47 RQRLRWTDELHGRFLDAVTQLGGPDRATPKGILRTMGVQGLTIYHVKSHLQKYRL 101 58****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	11.896	44	104	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	5.3E-31	46	102	IPR009057	Homeodomain-like
SuperFamily	SSF46689	6.09E-18	46	102	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.6E-25	48	102	IPR006447	Myb domain, plants
Pfam	PF00249	1.1E-7	49	100	IPR001005	SANT/Myb domain
Pfam	PF14379	1.3E-21	133	179	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 269 aa Download sequence Send to blast
MYEPKPFSSS GSAHNNPIHH NQQIVPTANS AASNIGGNSS NINFATRQRL RWTDELHGRF 60 LDAVTQLGGP DRATPKGILR TMGVQGLTIY HVKSHLQKYR LSKYIPDPTA DGANSDKKEL 120 GNLLAGIESS PGMKISEALK LQMEVQKRLR DQLEVQRQLQ LRIEAQGKYL QKIMEEQQRL 180 TGVLCESGTL NALVPVQELH QDFNKTDPLT PVPTSEPLIR DKAATVSDDH EGTDGLLKVL 240 SSHDKCHSSG REPLTPDSSC GAASRLPL*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4r_A	8e-22	47	104	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	8e-22	47	104	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	8e-22	47	104	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	8e-22	47	104	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Brast07G166400.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003563637.1	0.0	myb family transcription factor PHL7 isoform X2
Refseq	XP_014754863.1	0.0	myb family transcription factor PHL7 isoform X2
Refseq	XP_024312888.1	0.0	myb family transcription factor PHL7 isoform X2
Swissprot	Q9SJW0	1e-87	PHL7_ARATH; Myb family transcription factor PHL7
TrEMBL	I1GXE0	0.0	I1GXE0_BRADI; Uncharacterized protein
STRING	BRADI1G36236.1	0.0	(Brachypodium distachyon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2220	38	96

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G01060.1	3e-88	G2-like family protein

Link Out ? help Back to Top
Phytozome	Brast07G166400.1.p