PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast07G147700.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family HSF
Protein Properties Length: 347aa    MW: 37865.5 Da    PI: 4.4608
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast07G147700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind97.41.4e-30481382101
                         HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXX CS
        HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkke 92 
                         Fl k+++++ed++++ ++sw +  nsfvv+d++ fa ++Lp +Fkh nf+SF+RQLn+YgF+kv+ ++         weF++  F  g+++
  Brast07G147700.1.p  48 FLAKTFDMVEDPATDAVVSWGAARNSFVVWDPHAFAARLLPLHFKHANFSSFLRQLNTYGFRKVNADR---------WEFANAGFLGGQRH 129
                         9********************999*****************************************999.........************** PP

                         XXXXXXXXX CS
        HSF_DNA-bind  93 llekikrkk 101
                         ll  i+r++
  Brast07G147700.1.p 130 LLAGIRRRR 138
                         *******97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004151.5E-4944137IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467855.3E-3045137IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.101.6E-3345137IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004472.2E-2748137IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.1E-164871IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.1E-168698IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434087111IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.1E-1699111IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 347 aa     Download sequence    Send to blast
MEYSAGTLTD VKQEDPELVV LDDEVEDCCL LLPPTPMDLS ASAAVAPFLA KTFDMVEDPA  60
TDAVVSWGAA RNSFVVWDPH AFAARLLPLH FKHANFSSFL RQLNTYGFRK VNADRWEFAN  120
AGFLGGQRHL LAGIRRRRGA DRRPACSPSA EAGGVEGELE RLRRDREALA RELARLKRQQ  180
EESRAALLDM ERRVQGTERR QEQCKAFLAR AVRNPNFLDN LARRNGLTEA VPVEDGCKKK  240
RKMLDDAVTP APADGSITFE ELALAAGVDV EAAAIATSQS AVGGVTTDMV WYELLGEEQA  300
EIDVELDELV AAAAAADAGP WEEIGDEEVQ ELVHQIDCFA GSPSSS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hdg_A5e-22451377110Heat shock factor protein 1
5hdn_A5e-22451377110Heat shock factor protein 1
5hdn_B5e-22451377110Heat shock factor protein 1
5hdn_C5e-22451377110Heat shock factor protein 1
5hdn_D5e-22451377110Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1160165RLRRDR
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast07G147700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3727011e-149AK372701.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3009M23.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014754610.10.0putative heat stress transcription factor A-6a
SwissprotQ5Z6A41e-110HFA6A_ORYSJ; Putative heat stress transcription factor A-6a
TrEMBLI1GXX30.0I1GXX3_BRADI; Uncharacterized protein
STRINGBRADI1G37720.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP12137394
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G51910.13e-49heat shock transcription factor A7A