PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast07G136300.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family bHLH
Protein Properties Length: 350aa    MW: 37430 Da    PI: 7.9727
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast07G136300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH43.75.1e-14100150255
                         HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         ++ah  +Er+RR+++N+ ++ Lr+l+P     + k+ + a+i   +v+YIk+Lq
  Brast07G136300.1.p 100 KTAHITVERNRRKQMNEHLAALRSLMPCF---YVKRGDQASIIGGVVDYIKELQ 150
                         689*************************9...9********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.89498149IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.32E-1799174IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.7E-14100162IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.5E-11100150IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.54E-14100154No hitNo description
SMARTSM003531.8E-11104155IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 350 aa     Download sequence    Send to blast
MGDVALCGQL LVDNVVDGEF QLPSDAEDLF SILETWEDCV NSGAATTALS PASGASSGAL  60
LAPAGNKLGS KRRMAQEQEG NDDTAAQAQR RRKCSPEAPK TAHITVERNR RKQMNEHLAA  120
LRSLMPCFYV KRGDQASIIG GVVDYIKELQ QVKQSLEAKK QRKAYTEQVL SPRPLPSPSP  180
RLPLSPLLKY STPPLSPRLA TMSPCRTPPT PGSPYKLIRP LPLPLPPPMS SGSCAYVSPA  240
MTPTGCPDPS LDAIAAELSV YAAKRQATLL PDVRVEFAGA NLVLKTVSPR TPGQAVKIVA  300
ALEGRALEIL HAKISTVDDT DVNAFTVKIG IECQLSAEEL VQEIQQTFS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17092KRRMAQEQEGNDDTAAQAQRRRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast07G136300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0933905e-79FP093390.1 Phyllostachys edulis cDNA clone: bphyem213c13, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003560684.10.0transcription factor SPEECHLESS
TrEMBLI1GY680.0I1GY68_BRADI; Uncharacterized protein
STRINGBRADI1G38650.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP34843577
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G53210.15e-36bHLH family protein