PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast07G121100.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family WRKY
Protein Properties Length: 297aa    MW: 32171.8 Da    PI: 6.0387
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast07G121100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY75.27.8e-24163222259
                         --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES.--SS- CS
                WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYeg.eHnhe 59 
                          D ++WrKYGqK vkgs+++r+YYrC++a +C ++k +e + +dp++++ tY+g +Hnh 
  Brast07G121100.1.p 163 ADPWAWRKYGQKLVKGSPYTRGYYRCSTAkECGARKMMELCPTDPDTLILTYTGaDHNHA 222
                         599***********************9998***********************9569996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.5E-23156224IPR003657WRKY domain
PROSITE profilePS5081124.248157223IPR003657WRKY domain
SuperFamilySSF1182902.22E-20159224IPR003657WRKY domain
SMARTSM007744.3E-22162223IPR003657WRKY domain
PfamPF031066.1E-19164221IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    Send to blast
MKGDAGWYYQ TAGHNDWDLN AVVRYACGGR VSQPRPSDDP FAPFLPPAAP APDVTTMGAG  60
PSSLLPELTP NYDDPLAVVD ELSIAYLVTQ PQLALQPPRQ PAQPPAAVVQ PQPDDAAPVP  120
PPVPQTTVGQ ASRAEEKPRS KRQKKQPKRF VKKRVAVGAA WEADPWAWRK YGQKLVKGSP  180
YTRGYYRCST AKECGARKMM ELCPTDPDTL ILTYTGADHN HAPPTHRNSL AGTTRNRQQQ  240
QRHASSAVPA AAQSQSPAQS TSPSTEMDED AEMDDDDLLK LLNQATDTGA DDGEWP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A4e-141642241977Probable WRKY transcription factor 4
2lex_A4e-141642241977Probable WRKY transcription factor 4
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast07G121100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003560717.11e-124WRKY transcription factor 22 isoform X2
TrEMBLA0A0Q3NLD21e-123A0A0Q3NLD2_BRADI; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP125622536
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01250.13e-30WRKY family protein