PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Brast07G114700.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | bHLH | ||||||||
Protein Properties | Length: 245aa MW: 26207.2 Da PI: 5.2897 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 23.2 | 1.2e-07 | 155 | 198 | 7 | 55 |
HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 ++ + RR+ri +++ L+el+P+ K++ +++L kA+ Y+k +q Brast07G114700.1.p 155 QAAKSRRERIGERLRALQELVPNG-----SKVDMVTMLDKAITYVKFMQ 198 66799******************5.....5****************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 2.75E-13 | 146 | 210 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 8.4E-12 | 147 | 206 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 14.869 | 148 | 197 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 3.08E-11 | 149 | 201 | No hit | No description |
SMART | SM00353 | 3.0E-9 | 154 | 203 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 5.6E-5 | 155 | 198 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 245 aa Download sequence Send to blast |
MALVGQPTTL CYDGFAGDGV PPFMDACCLA FDHGNDYNNP HAWEFSTGNS SAFDVAWTGV 60 SSTSPALTFD AAEYCAQQAA WMDATATDQL SSYSPSTATV PASYKRPRAH VQPQQEAEQE 120 SIAPNPKKQC GDGKASIKSS AAGTGTSPRK EPQSQAAKSR RERIGERLRA LQELVPNGSK 180 VDMVTMLDKA ITYVKFMQLQ LTVLETDAFW PAQGGAAPEI SQVKAALDAI ILSSSRSQQP 240 HQWS* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Brast07G114700.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010229851.1 | 1e-147 | transcription factor bHLH83 | ||||
Swissprot | Q9C707 | 7e-40 | BH083_ARATH; Transcription factor bHLH83 | ||||
TrEMBL | I1GYN5 | 1e-145 | I1GYN5_BRADI; Uncharacterized protein | ||||
STRING | BRADI1G42440.1 | 1e-146 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1412 | 38 | 117 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G66470.1 | 3e-42 | ROOT HAIR DEFECTIVE6 |
Link Out ? help Back to Top | |
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Phytozome | Brast07G114700.1.p |