PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast07G100200.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family G2-like
Protein Properties Length: 476aa    MW: 51068.5 Da    PI: 6.1458
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast07G100200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like87.61.2e-27192246156
             G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                         k++++WtpeLH+rFv+aveqL G++kA+P++ile+m++++Lt+++++SHLQkYR++
  Brast07G100200.1.p 192 KAKVDWTPELHRRFVQAVEQL-GIDKAVPSRILEIMGIDSLTRHNIASHLQKYRSH 246
                         6799*****************.********************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.924189248IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.3E-27190249IPR009057Homeodomain-like
SuperFamilySSF466897.17E-19190249IPR009057Homeodomain-like
TIGRFAMsTIGR015571.8E-26192246IPR006447Myb domain, plants
PfamPF002496.6E-8195244IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007165Biological Processsignal transduction
GO:0009658Biological Processchloroplast organization
GO:0009910Biological Processnegative regulation of flower development
GO:0010380Biological Processregulation of chlorophyll biosynthetic process
GO:0010638Biological Processpositive regulation of organelle organization
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:1900056Biological Processnegative regulation of leaf senescence
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 476 aa     Download sequence    Send to blast
MLAVSAARCG ADAEHQQHAG VESTPVGGHF DMDQLDFTVD DIDFGDFFLR LEHGDALPDL  60
EVDDDPAADI FSDFEAAVTT GAVEDLQDQE VPCDEHELLQ GALHVDVGSV SPTGGVIGAV  120
ENMAFAEAAD GEEEEKEGCN QAMVDGNVDC NIGGNGAAAA DARSPCSRTS SSQEAESRHK  180
SSRKKNSHGK KKAKVDWTPE LHRRFVQAVE QLGIDKAVPS RILEIMGIDS LTRHNIASHL  240
QKYRSHRKHM LAREAEAASW TQRRHTYAAG GPGGAAKKQD TNMWTVPTIG FLPSPTPLPP  300
PPPPHPVMQH FVRPLHVWGH PSTDPHSPRM AAVWPPRHPA TPRVPVPPPS WAAPPPPFWH  360
HPYMRGPAHT YMPPTHGTPC VAMPMAPAKF PAPPVAGVMP CPVYTPLSAP ASKKQQDSQL  420
QLQAQPSNES VDAAIGDVLT KPWLPLPLGL KPPSLGSVMG ELQRQGVSNV PQTCG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A2e-16189244257ARR10-B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional activator that promotes chloroplast development. Acts as an activator of nuclear photosynthetic genes involved in chlorophyll biosynthesis, light harvesting, and electron transport. {ECO:0000269|PubMed:19808806}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00022PBMTransfer from AT2G20570Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast07G100200.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By light. {ECO:0000269|PubMed:11340194}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024313157.10.0probable transcription factor GLK1 isoform X1
RefseqXP_024313158.10.0probable transcription factor GLK1 isoform X2
SwissprotQ5Z5I41e-147GLK1_ORYSJ; Probable transcription factor GLK1
TrEMBLI1GZ350.0I1GZ35_BRADI; Uncharacterized protein
STRINGBRADI1G43710.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP24153886
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G44190.11e-43GOLDEN2-like 2
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Zhang Y, et al.
    A highly efficient rice green tissue protoplast system for transient gene expression and studying light/chloroplast-related processes.
    Plant Methods, 2011. 7(1): p. 30
    [PMID:21961694]