PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Brast07G091600.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | MYB_related | ||||||||
Protein Properties | Length: 245aa MW: 28359.9 Da PI: 7.3459 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 34.9 | 3.7e-11 | 153 | 199 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r+ WT +E+ l++++ +G g Wk I++ + + Rt+ q+ s+ qky Brast07G091600.1.p 153 RNFWTIDEHRLFLRGLSVYGRGKWKEISKNFVTSRTPLQISSHAQKY 199 678*******************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 14.645 | 148 | 204 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.9E-15 | 150 | 205 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 8.1E-9 | 152 | 202 | IPR001005 | SANT/Myb domain |
TIGRFAMs | TIGR01557 | 5.3E-13 | 153 | 202 | IPR006447 | Myb domain, plants |
Gene3D | G3DSA:1.10.10.60 | 4.4E-10 | 153 | 201 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.94E-7 | 156 | 200 | No hit | No description |
Pfam | PF00249 | 2.7E-8 | 156 | 199 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 245 aa Download sequence Send to blast |
MNTRANQKWT SSEVEEARSV IASLNSKYRD YDGEYHDNII GELQAKFPSK TMHQVRDLYV 60 DLVVEMDMMQ CEEKEYGGAN GVIHNIDGHV NNYGVPEERE VSMDGKDILH GFPLKHVGIV 120 ETMKKVPVVK DNNVEVLENK MPVHQPVVER SSRNFWTIDE HRLFLRGLSV YGRGKWKEIS 180 KNFVTSRTPL QISSHAQKYF KRLQKGSERQ RYSINDVELE NNDRMNLENN ARPSQNIGQF 240 KFPF* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Brast07G091600.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010229882.2 | 7e-76 | transcription factor DIVARICATA | ||||
TrEMBL | A0A0Q3H7V1 | 7e-99 | A0A0Q3H7V1_BRADI; Uncharacterized protein | ||||
STRING | MLOC_16598.1 | 5e-78 | (Hordeum vulgare) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP842 | 30 | 133 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G58900.1 | 3e-21 | Homeodomain-like transcriptional regulator |
Link Out ? help Back to Top | |
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Phytozome | Brast07G091600.1.p |