PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast07G091200.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family MYB_related
Protein Properties Length: 267aa    MW: 30794 Da    PI: 6.1312
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast07G091200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding37.55.7e-12152197247
                         SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
     Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                           WTteE+ l++ + +  G g Wk I++++ + Rt+ q+ s+ qky
  Brast07G091200.1.p 152 RFWTTEEHRLFLLGLRVCGRGKWKDISKYFVTSRTPVQISSHAQKY 197
                         56*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.052146202IPR017930Myb domain
SMARTSM007172.4E-9150200IPR001005SANT/Myb domain
SuperFamilySSF466891.45E-15150202IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.7E-10151199IPR009057Homeodomain-like
TIGRFAMsTIGR015576.9E-13151200IPR006447Myb domain, plants
CDDcd116604.98E-8152191No hitNo description
PfamPF002498.4E-9154197IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 267 aa     Download sequence    Send to blast
MNLGGNQEWT SSEVEEARSI IASGCDDKNK KLNIIDELQA KFHWKPMHQV RDLYVDLVVE  60
MCMTQCEEKE YSGPDRMHGV ICTIDDHVNK NYGVPEEQEV SMDDKEFLHG FQLEHVEVME  120
TMKEMPVPKE NEGEALENKM PIHQPVAHCT RRFWTTEEHR LFLLGLRVCG RGKWKDISKY  180
FVTSRTPVQI SSHAQKYFKR LETKGLGMQR YSIHDVELND NDPIKMENNS SRPSKRAAAI  240
PTSCFLQIPS NPSVTMDNIA QFKFPF*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast07G091200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014752587.22e-87protein REVEILLE 1
TrEMBLA0A0Q3H7V11e-146A0A0Q3H7V1_BRADI; Uncharacterized protein
STRINGBRADI1G72300.12e-87(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP84230133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49010.12e-21MYB family protein