PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Brast07G078300.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
|
||||||||
Family | B3 | ||||||||
Protein Properties | Length: 231aa MW: 26700.3 Da PI: 9.7308 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 47.9 | 2.4e-15 | 132 | 222 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 f+k +t+s+v+ +l lp +f +++ +k ++ ++l de+ + e + k++ l++GW++F+ +++L +gD +vF+l++r++f Brast07G078300.1.p 132 FVKPMTQSHVTGGFWLGLPTQFSRKYL-PK-RDERIILVDEEDDESETLYLALKRG----LSAGWRGFAIDHKLVDGDCLVFQLIERTKF- 215 89************************4.32.4457999998888888888555555....9************************98888. PP .EEEEE-S CS B3 92 lvvkvfrk 99 +v ++r+ Brast07G078300.1.p 216 -KVYIIRE 222 .8988886 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 2.55E-23 | 126 | 223 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 1.1E-19 | 127 | 223 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.03E-25 | 130 | 221 | No hit | No description |
PROSITE profile | PS50863 | 11.787 | 132 | 223 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 7.8E-19 | 132 | 223 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 3.0E-13 | 132 | 222 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 231 aa Download sequence Send to blast |
MAGAIPYEEQ RRRQVEENKR KLEELRLHHL SAAVREAAAK PSPAKSLKRK SRVQGEAGQD 60 VPLRRSGRVA SLPEQPKYRY EDSLVFEKKP RRTYSTRKDL TNRVYATDEA RDYTITKAEE 120 LQDKLGSGYP IFVKPMTQSH VTGGFWLGLP TQFSRKYLPK RDERIILVDE EDDESETLYL 180 ALKRGLSAGW RGFAIDHKLV DGDCLVFQLI ERTKFKVYII RESSYYENDN * |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Brast07G078300.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AK374346 | 5e-44 | AK374346.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv3061L19. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_010227844.1 | 1e-163 | B3 domain-containing protein Os06g0194400 | ||||
Refseq | XP_010227845.1 | 1e-163 | B3 domain-containing protein Os06g0194400 | ||||
Swissprot | Q69V36 | 1e-122 | Y6944_ORYSJ; B3 domain-containing protein Os06g0194400 | ||||
TrEMBL | I1GZP0 | 1e-162 | I1GZP0_BRADI; Uncharacterized protein | ||||
STRING | BRADI1G45517.1 | 1e-163 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1756 | 38 | 103 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G19184.1 | 8e-56 | B3 family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Brast07G078300.1.p |
Publications ? help Back to Top | |||
---|---|---|---|
|