PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast07G070800.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family GeBP
Protein Properties Length: 296aa    MW: 31938.9 Da    PI: 10.2683
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast07G070800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF57353.19e-1798185396
              DUF573   3 fqrlwseeDeivlLqGlidfkaktgkspsd.didafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifels 92 
                         +q+lw+e De++lL G i+f+a++g+ p   d+ a++e +++s+s ++ +  +  K++rLK Kf +             s++h+  + +ls
  Brast07G070800.1.p  98 AQKLWTEADEVALLNGAISFRARNGAPPRLpDMGALFESIRNSLSPHIDQAKVYYKLKRLKSKFFNSAPA-------GTSNPHELLVRGLS 181
                         79************************77666**********************************98877.......45556665555666 PP

              DUF573  93 kkiW 96 
                           +W
  Brast07G070800.1.p 182 ADLW 185
                         5555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045043.5E-1599185IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 296 aa     Download sequence    Send to blast
MPSSKRPLPR AAMDDGDAAD GLRPSSPRSK KRSSRPKARS GDRRSPNPNP RRRGDYHGSE  60
PSRKSERKRK PRSFPDSTPL ALAAAAPASS SAGGHGAAQK LWTEADEVAL LNGAISFRAR  120
NGAPPRLPDM GALFESIRNS LSPHIDQAKV YYKLKRLKSK FFNSAPAGTS NPHELLVRGL  180
SADLWDTELA PPVEDDVVAE EEDPEDGYTG ADVVGAASLP LVSGLLGEYW RRNGRALSGV  240
SLEKGLELLG ADEGRVAEAK WRRQLDAEMR TQVRRHDLAK EVFGLLIDAV KGLGP*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15069RRRGDYHGSEPSRKSERKRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast07G070800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003564112.11e-152STOREKEEPER protein
TrEMBLI1GZW51e-151I1GZW5_BRADI; Uncharacterized protein
STRINGBRADI1G46160.11e-151(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP26822763
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00250.18e-10DNA-binding storekeeper protein-related transcriptional regulator