PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast07G050900.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family GRAS
Protein Properties Length: 469aa    MW: 51370.6 Da    PI: 6.9463
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast07G050900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS351.11.7e-107644411373
                GRAS   1 lvelLlecAeavssgdlelaqalLarlsel...aspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevs 88 
                         lv+ L++cA a+++gd ++a + La+ +++     p+   + R++++f+ ALa rl++  s l++ +pps++++    ++   ++ f++v 
  Brast07G050900.1.p  64 LVHILITCAAAIQAGDYTAAASNLAEAHTIlatTIPTSFGIGRVTSHFATALAYRLFS-ASPLFS-MPPSSSPWA-NNHAGEQYRQFYDVV 151
                         689***********************9999633445556899***************9.666664.555555543.4445567899***** PP

                GRAS  89 PilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefn 179
                         P lkf+h+taNqaIlea++g++rvHiiD+ i+ GlQW++L++a++ +p+gpps+RiTgv++ ++g +e l+e+g  L++ A+ l+vpf+f+
  Brast07G050900.1.p 152 PHLKFAHFTANQAILEAFQGHDRVHIIDLAIMRGLQWLPLIHAFSIQPGGPPSIRITGVVPTHTGPREDLQEVGLLLTEHARILNVPFSFH 242
                         *************************************************************9999************************** PP

                GRAS 180 vlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsles....erdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysa 266
                          +++++le l+++++++ + Ea+aVn++ qlhrll ++   +     ++d+vL+ +  ++Pkv+++veqeadhn++++ erf++al yy +
  Brast07G050900.1.p 243 SVTCDSLEGLKPWMFHLVRSEAVAVNSICQLHRLLVDPDVASTslppPIDTVLSWITAMQPKVFTIVEQEADHNKPTLIERFTNALFYYGV 333
                         **********************************95543222235559******************************************* PP

                GRAS 267 lfdsleaklpres.eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesg 356
                          fds+ea +p     +     ++ l+rei ++v++eg+ r+erhetl  Wr rl++aG+ +vpl+ ++   a++llr +++ gy+v e+ +
  Brast07G050900.1.p 334 AFDSMEAVAPMSRaGATGLGAEAHLQREIFDIVCNEGSGRVERHETLPCWRGRLRRAGLAQVPLGPNNFRHASMLLRVFSGAGYHVMEHGD 424
                         *****9998887764444445555******************************************************************* PP

                GRAS 357 slvlgWkdrpLvsvSaW 373
                          l+l W+++pL+svS+W
  Brast07G050900.1.p 425 GLMLAWHGNPLFSVSVW 441
                         ***************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098551.75438422IPR005202Transcription factor GRAS
PfamPF035145.9E-10564441IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 469 aa     Download sequence    Send to blast
MRNFLLNWPS TGTATSSLLT GTIPSPSTQA AATTNTNNRV DPSTHASDRL HLAMSLHERA  60
AIRLVHILIT CAAAIQAGDY TAAASNLAEA HTILATTIPT SFGIGRVTSH FATALAYRLF  120
SASPLFSMPP SSSPWANNHA GEQYRQFYDV VPHLKFAHFT ANQAILEAFQ GHDRVHIIDL  180
AIMRGLQWLP LIHAFSIQPG GPPSIRITGV VPTHTGPRED LQEVGLLLTE HARILNVPFS  240
FHSVTCDSLE GLKPWMFHLV RSEAVAVNSI CQLHRLLVDP DVASTSLPPP IDTVLSWITA  300
MQPKVFTIVE QEADHNKPTL IERFTNALFY YGVAFDSMEA VAPMSRAGAT GLGAEAHLQR  360
EIFDIVCNEG SGRVERHETL PCWRGRLRRA GLAQVPLGPN NFRHASMLLR VFSGAGYHVM  420
EHGDGLMLAW HGNPLFSVSV WHVMEEELED NKNNVVRHVT TGAMLSMH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A3e-427144126378Protein SCARECROW
5b3h_A3e-427144125377Protein SCARECROW
5b3h_D3e-427144125377Protein SCARECROW
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast07G050900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003561023.10.0DELLA protein GAI
TrEMBLA0A0Q3L8980.0A0A0Q3L898_BRADI; Uncharacterized protein
STRINGBRADI1G47900.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP99838138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14920.14e-88GRAS family protein