PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast07G026300.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family NAC
Protein Properties Length: 401aa    MW: 43489.5 Da    PI: 7.6433
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast07G026300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM161.92.3e-50111451128
                 NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvka.eekewyfFskrdkkyatgkrknratksgyWkatgk 88 
                         +ppGfrFhPt+eel+++yL+kkv++++++l +vi++vd++k+ePwd+++  ++ +  +++wy Fs++dkky+tg+r+nrat++g+Wkatg+
  Brast07G026300.1.p  11 VPPGFRFHPTEEELLTYYLAKKVASRRIDL-DVIPDVDLNKLEPWDIQErcRIGTgPQSDWYLFSHKDKKYPTGTRTNRATAAGFWKATGR 100
                         69****************************.9***************953444442445******************************** PP

                 NAM  89 dkevlsk.....kgelvglkktLvfykgrapkgektdWvmheyrl 128
                         dk+++s+     +++++g++ktLvfykgrap+g+k+dW+mheyrl
  Brast07G026300.1.p 101 DKPIYSSsssssSTSKIGMRKTLVFYKGRAPHGTKSDWIMHEYRL 145
                         ******9777666667***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.48E-557180IPR003441NAC domain
PROSITE profilePS5100555.64211180IPR003441NAC domain
PfamPF023655.0E-2612145IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 401 aa     Download sequence    Send to blast
MSISVNGQSV VPPGFRFHPT EEELLTYYLA KKVASRRIDL DVIPDVDLNK LEPWDIQERC  60
RIGTGPQSDW YLFSHKDKKY PTGTRTNRAT AAGFWKATGR DKPIYSSSSS SSSTSKIGMR  120
KTLVFYKGRA PHGTKSDWIM HEYRLHDDQT QLSPGASSSP IRGVDQQQEE GWVICRVFKK  180
KNLICNNNNN NQALVTQMVV TTTTNNNNNK QPAPVSPSRS CSAVSDDRHV SRAAQTMLHH  240
HYAAAGSGDA DTLDHILRYM GKQESKPLTS ACSLPAMDVL QYNSLANGGG TLYDKFMKLP  300
PLEHVVVSGS GAGGGALLPP PAQYSGDCWA DTLAAYELNN GGLSDDGSTK TANGGGMSTA  360
PCFFVDEHQQ HGHGGGDGDL WSLARSVSTL HADLTTMNNV *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A2e-471118215170Stress-induced transcription factor NAC1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast07G026300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJQ6934280.0JQ693428.1 Brachypodium distachyon SWN7 (SWN7) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001266835.10.0uncharacterized protein LOC100830276
TrEMBLI1H1A10.0I1H1A1_BRADI; SWN7
STRINGBRADI1G50057.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP159738112
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46770.11e-80NAC family protein