PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast07G005600.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family MYB
Protein Properties Length: 1343aa    MW: 151907 Da    PI: 8.1502
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast07G005600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.62.4e-171461148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        +g+WT+eEd+llvd++  +G g+W++ +r  g++Rt+k+c++rw ++l
  Brast07G005600.1.p 14 KGPWTPEEDKLLVDYIGAHGHGSWHRLPRLAGLNRTGKSCRLRWTNHL 61
                        79*******************************************996 PP
2Myb_DNA-binding46.21.1e-1467112148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                         r ++T +E++ll  +   lG++ W++Ia +m+ gRt++++k++w+++l
  Brast07G005600.1.p  67 RVPFTNDEEKLLFSLRSTLGNK-WSKIATRMP-GRTGNEIKNYWFTHL 112
                         689*******************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.45961IPR017930Myb domain
SuperFamilySSF466891.29E-2812108IPR009057Homeodomain-like
SMARTSM007171.9E-141363IPR001005SANT/Myb domain
PfamPF002498.0E-151461IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.5E-211568IPR009057Homeodomain-like
CDDcd001671.00E-101661No hitNo description
PROSITE profilePS5129423.4162116IPR017930Myb domain
SMARTSM007178.4E-1566114IPR001005SANT/Myb domain
PfamPF002491.9E-1367112IPR001005SANT/Myb domain
CDDcd001679.17E-1169112No hitNo description
Gene3DG3DSA:1.10.10.601.1E-2169116IPR009057Homeodomain-like
CDDcd147982.83E-9338416No hitNo description
SuperFamilySSF525404.3E-53523799IPR027417P-loop containing nucleoside triphosphate hydrolase
Gene3DG3DSA:3.40.50.3009.7E-17537709IPR027417P-loop containing nucleoside triphosphate hydrolase
PfamPF009311.2E-52555825IPR002182NB-ARC
PRINTSPR003647.6E-12560575No hitNo description
PRINTSPR003647.6E-12634648No hitNo description
PRINTSPR003647.6E-12731745No hitNo description
Gene3DG3DSA:3.80.10.101.1E-8780795IPR032675Leucine-rich repeat domain, L domain-like
SuperFamilySSF520581.09E-208671250IPR032675Leucine-rich repeat domain, L domain-like
Gene3DG3DSA:3.80.10.101.1E-89401027IPR032675Leucine-rich repeat domain, L domain-like
PRINTSPR003647.6E-129921008No hitNo description
Gene3DG3DSA:3.80.10.101.1E-811311232IPR032675Leucine-rich repeat domain, L domain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0043531Molecular FunctionADP binding
Sequence ? help Back to Top
Protein Sequence    Length: 1343 aa     Download sequence    Send to blast
MGRLPCRDGA GVEKGPWTPE EDKLLVDYIG AHGHGSWHRL PRLAGLNRTG KSCRLRWTNH  60
LRPDIKRVPF TNDEEKLLFS LRSTLGNKWS KIATRMPGRT GNEIKNYWFT HLRKKLPDMG  120
IDPDPQRPLI DGFRDIYRRA LVEASSLPTS VGPGSSSNIL QDPPDPKSCA VPDEFFDFST  180
VASFDFGAGD TQTDGLRNFY PPTSVGPGSS SSIPADPARS LDFSTSFDFG SASPSSSIQA  240
DPAQFLDCSN YFDFDSGDTH NDLLSNVNPH TFLEELANSF FPPYSGAGSS SFSIKANPAQ  300
PPSSSFYTAS GIVLEESAFL SSSHNSPLFD DSVSASSGAM RPLVGKLDKL LEGSVSISKR  360
VKDGVRLLKD DVEEISSYLD ELSGLEDPPP MAKCWMNEVR DLSYDIEDYI DSTLFRRPNC  420
LNKKKKKMMM KKFTNHVKIP KIRLKCCNCK QTKSKHVKTR WVCRNIRHIV INNRRSKRPR  480
NIGAPEMISD FRKYLQEAIE RHDRYKLHCC STLRRRFLST GRMLPTPYEE ADQIVMDDRT  540
KTFINSLVSN DAADQQQLKV VSVLGSGCLG KTTLAKQLYN RIGMQFDCRA FIRVPKNPDM  600
KRLFRDLFSQ LHHKKQPLPT SSNELVISDN ISNYLEDKRY LIVIDDLLDA SVWDIIKYAF  660
PKGNRGSRII TTTQIEDVAL TCCCDNSEHV FEMKPLNDDH SRKLFFDRLF GKESGCPEEF  720
KQVSDEIVDM CGGLPLAIIN IASHLANQQN AVSMDLLIHI RDSLRSDLQS NSTSERTRQV  780
LNLSYNNLPD CLKTCLLYLG MYPEGSIISK DDMVKKWMAE RFAAREQKEQ DQDMMEKAGN  840
YFSELIDRRF IQPIYTDYNN KVLSCMVHDV VRDLIAHKSA EENFIVVVDY NRKNIALSHK  900
VRRLSLLFGD ARYAKTPANI RMSQVRSLVF FGLFECMPCI KEFKVLRVLN LQLSSHCGDH  960
DPIDLTGISE LLQLRYLKIA SDVCIKLPNS MRRLQCLETL DIMGVTRLAF FPWDIIHLPH  1020
LFHLTLPADT KLLNWIGSMS DSVISLWSLG KLKYLQDLHL IDPSTHLSYY LERSMKALCS  1080
LLEGHGNLKT IVVARGSSAK NIIYGDSNVI IPWDHMAPPP LLQRFEFSPD SSIIFFRIPP  1140
WVQNLSNLRI LKIAVMALQM SCLDILGSLP ALTALSLHLR RAPTYEISFD NNGFSALKYF  1200
KLRFMSGLAW LNFEADAMPG LWKLKLVFND IPEMDHQGGT PTISIEHMPG LKAISAKFGG  1260
AASDVEYALR NIISNHPSNP RVNMQFVGYS SNVDGSTKEK QSSDDIMEEP DEYVRQQIRE  1320
RSSDKRISKS PESTSRLHVP EK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j5t_C1e-365491001177616Disease resistance RPP13-like protein 4
6j5t_F1e-365491001177616Disease resistance RPP13-like protein 4
6j5t_G1e-365491001177616Disease resistance RPP13-like protein 4
6j5t_L1e-365491001177616Disease resistance RPP13-like protein 4
6j5t_O1e-365491001177616Disease resistance RPP13-like protein 4
6j5u_A1e-365491001177616Disease resistance RPP13-like protein 4
6j5v_A1e-365491001177616Disease resistance RPP13-like protein 4
6j5w_A1e-365491001177616Disease resistance RPP13-like protein 4
6j6i_C1e-365491001177616Disease resistance RPP13-like protein 4
6j6i_F1e-365491001177616Disease resistance RPP13-like protein 4
6j6i_G1e-365491001177616Disease resistance RPP13-like protein 4
6j6i_L1e-365491001177616Disease resistance RPP13-like protein 4
6j6i_O1e-365491001177616Disease resistance RPP13-like protein 4
6s2p_N7e-385258822347NRC1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1422431KKKKKMMMKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast07G005600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010228126.10.0putative disease resistance RPP13-like protein 3 isoform X1
RefseqXP_014752341.10.0putative disease resistance RPP13-like protein 3 isoform X1
TrEMBLA0A0Q3S4970.0A0A0Q3S497_BRADI; Uncharacterized protein
STRINGEMT296410.0(Aegilops tauschii)
STRINGMLOC_64708.50.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP8320712
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02940.11e-55myb domain protein 107