PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast06G247300.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family M-type_MADS
Protein Properties Length: 322aa    MW: 35525.1 Da    PI: 6.1789
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast06G247300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF44.32.3e-14652349
                        --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
              SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                        i+n++ r+vtf kRr g++K A  LS L+ a++a+i+   +gk++ +
  Brast06G247300.1.p  6 IDNDIERNVTFFKRRFGLFKGAADLSALTSARAAIILETADGKVHSF 52
                        9********************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006617.367156IPR002100Transcription factor, MADS-box
SMARTSM004322.1E-8155IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.4E-14466IPR002100Transcription factor, MADS-box
PfamPF003196.7E-15652IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 322 aa     Download sequence    Send to blast
MGVAYIDNDI ERNVTFFKRR FGLFKGAADL SALTSARAAI ILETADGKVH SFGTPSANTI  60
VDAFLSGGPP MKSFTDEATN TRISWLQSEV ARLDKENEVE EKRKKLAIQR IKEIQDQNLG  120
MVANHLFSKQ EDLNLEVLTN IFNELLCVQQ DMAHRLPPLR HVKSRGGNET PRLLMHLLGS  180
RMLPRQPPSA IPPQSVPNKI FAPPFSMQAP KMLQRTQLAS LSPTLGQMHE SPPLSQLPFH  240
NSASPYNTMD PLQNNSGPSS AFEHNIQDPP LLPYYKRFPE AETYLGHQST DVGQAHMGND  300
GSTDAPTQYS CCGEDDDDGT S*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast06G247300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024316412.11e-158LOW QUALITY PROTEIN: agamous-like MADS-box protein AGL28
TrEMBLA0A0Q3FI231e-128A0A0Q3FI23_BRADI; Uncharacterized protein
STRINGBRADI1G57410.11e-117(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30892276
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01530.11e-12AGAMOUS-like 28