PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Brast06G246100.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | C2H2 | ||||||||
Protein Properties | Length: 259aa MW: 28366.1 Da PI: 9.6512 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 14.2 | 0.00013 | 58 | 80 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C + F++ L H+++H Brast06G246100.1.p 58 YTCTFCRREFRSAQALGGHMNVH 80 9********************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 2.79E-6 | 55 | 85 | No hit | No description |
Pfam | PF13912 | 2.0E-5 | 58 | 81 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.0066 | 58 | 80 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 11.157 | 58 | 85 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 60 | 80 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 259 aa Download sequence Send to blast |
MAANYYWAGM WGGGASTTTT TTTTTLVRSS FPAAAEAPSW EEQAFARDVG CVWPPRSYTC 60 TFCRREFRSA QALGGHMNVH RRDRARLRQC ASPPAPAPDD LHHHQQQLAI IPSPKSPQAA 120 TTMTTTTTRA SPNSSYISTI LAAAADKEII ISNNSNTNKV FLSMPVFDAT ARLDQSAADE 180 ERICRKRRRV DQPPPATTMV ALPFFVRRRS PPPVSCEREA DHHGDAKVPK LMVSSPSRPL 240 HLALGRQEVD LELRLGTS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1njq_A | 3e-13 | 53 | 80 | 2 | 29 | superman protein |
2l1o_A | 3e-13 | 53 | 80 | 2 | 29 | Transcriptional regulator SUPERMAN |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 184 | 188 | RKRRR |
2 | 185 | 189 | KRRRV |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Brast06G246100.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC133008 | 3e-36 | AC133008.3 Oryza sativa Japonica Group cultivar Nipponbare chromosome 11 clone OSJNBb0026K20 map S10559, complete sequence. | |||
GenBank | AP014967 | 3e-36 | AP014967.1 Oryza sativa Japonica Group DNA, chromosome 11, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012619 | 3e-36 | CP012619.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 11 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010230127.1 | 1e-144 | probable transcriptional regulator RABBIT EARS | ||||
TrEMBL | I1H4I8 | 1e-143 | I1H4I8_BRADI; Uncharacterized protein | ||||
STRING | BRADI1G59750.1 | 1e-144 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP7845 | 29 | 43 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G37740.1 | 1e-25 | zinc-finger protein 10 |
Link Out ? help Back to Top | |
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Phytozome | Brast06G246100.1.p |